diff options
| -rw-r--r-- | sci-biology/prosite/ChangeLog | 59 | ||||
| -rw-r--r-- | sci-biology/prosite/Manifest | 10 | ||||
| -rw-r--r-- | sci-biology/prosite/files/digest-prosite-18.38 | 1 | ||||
| -rw-r--r-- | sci-biology/prosite/files/digest-prosite-18.39 | 1 | ||||
| -rw-r--r-- | sci-biology/prosite/files/digest-prosite-18.40 | 1 | ||||
| -rw-r--r-- | sci-biology/prosite/files/digest-prosite-18.41 | 1 | ||||
| -rw-r--r-- | sci-biology/prosite/metadata.xml | 19 | ||||
| -rw-r--r-- | sci-biology/prosite/prosite-18.38.ebuild | 35 | ||||
| -rw-r--r-- | sci-biology/prosite/prosite-18.39.ebuild | 35 | ||||
| -rw-r--r-- | sci-biology/prosite/prosite-18.40.ebuild | 35 | ||||
| -rw-r--r-- | sci-biology/prosite/prosite-18.41.ebuild | 35 |
11 files changed, 232 insertions, 0 deletions
diff --git a/sci-biology/prosite/ChangeLog b/sci-biology/prosite/ChangeLog new file mode 100644 index 000000000000..42380aaad905 --- /dev/null +++ b/sci-biology/prosite/ChangeLog @@ -0,0 +1,59 @@ +# ChangeLog for app-sci/prosite +# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/ChangeLog,v 1.1 2004/12/23 21:24:44 ribosome Exp $ + +*prosite-18.41 (23 Dec 2004) + + 23 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml, + +prosite-18.38.ebuild, +prosite-18.39.ebuild, +prosite-18.40.ebuild, + +prosite-18.41.ebuild: + Moved from app-sci/prosite to sci-biology/prosite. + +*prosite-18.41 (13 Dec 2004) + + 13 Dec 2004; Olivier Fisette <ribosome@gentoo.org> prosite-18.40.ebuild, + +prosite-18.41.ebuild: + New version: 18.41. Added 18.40 to x86. + +*prosite-18.40 (23 Nov 2004) + + 23 Nov 2004; Olivier Fisette <ribosome@gentoo.org> prosite-18.39.ebuild, + +prosite-18.40.ebuild: + New version: 18.40. Added 18.39 to x86. + +*prosite-18.39 (08 Nov 2004) + + 08 Nov 2004; Olivier Fisette <ribosome@gentoo.org> -prosite-18.36.ebuild, + prosite-18.38.ebuild, +prosite-18.39.ebuild: + New version (18.39). Added 18.38 to x86. Removed obsolete version. + +*prosite-18.38 (30 Oct 2004) + + 30 Oct 2004; Olivier Fisette <ribosome@gentoo.org> -prosite-18.32.ebuild, + prosite-18.36.ebuild, +prosite-18.38.ebuild: + Removed obsolete version (18.32). Added to x86 (18.36). New version (18.38). + +*prosite-18.36 (29 Sep 2004) + + 29 Sep 2004; Olivier Fisette <ribosome@gentoo.org> -prosite-18.26.ebuild, + prosite-18.32.ebuild, +prosite-18.36.ebuild: + Added x86 to 18.32. New version 18.36. Removed old version. + +*prosite-18.32 (10 Aug 2004) + + 10 Aug 2004; Olivier Fisette <ribosome@gentoo.org> + prosite-18.32.ebuild: + Updated package. + prosite-18.26.ebuild: + Added to x86. + + 26 Jun 2004; David Holm <dholm@gentoo.org> prosite-18.26.ebuild: + Added to ~ppc. + +*prosite-18.26 (24 Jun 2004) + + 24 Jun 2004; Olivier Fisette <ribosome@gentoo.org> + prosite-18.26.ebuild, metadata.xml : + Initial import. Ebuild submitted by Olivier Fisette <ribosome@gentoo.org>. + Reference: Gentoo Bugzilla, bug #54326 + diff --git a/sci-biology/prosite/Manifest b/sci-biology/prosite/Manifest new file mode 100644 index 000000000000..552afc4f7883 --- /dev/null +++ b/sci-biology/prosite/Manifest @@ -0,0 +1,10 @@ +MD5 ad15788d597d8132164264bf5a47152e prosite-18.41.ebuild 1053 +MD5 1dc5f78c8c1ddac5f64b607d3415258e prosite-18.39.ebuild 1052 +MD5 1f57fc61b02617b80c7a46013804997e prosite-18.40.ebuild 1052 +MD5 9e6b6b03257c738eef4fc8d1244c10a4 ChangeLog 1717 +MD5 81b73af5f2f4778bea2dde0b55620129 metadata.xml 810 +MD5 c04f92d03ee5c94d9d769acfb3c9a949 prosite-18.38.ebuild 1052 +MD5 681e2770cee55b9f73f52416d5afff8b files/digest-prosite-18.38 67 +MD5 be30a2901bbe78916e8e5ba3121a7262 files/digest-prosite-18.39 67 +MD5 72e0289273b3085b31e4244ba04f1b13 files/digest-prosite-18.40 67 +MD5 9c2f10f8894ca2905205055e4b8d0063 files/digest-prosite-18.41 67 diff --git a/sci-biology/prosite/files/digest-prosite-18.38 b/sci-biology/prosite/files/digest-prosite-18.38 new file mode 100644 index 000000000000..d0aa4f243dd8 --- /dev/null +++ b/sci-biology/prosite/files/digest-prosite-18.38 @@ -0,0 +1 @@ +MD5 50e94ad7380dc99ff3c6ecca4591b168 prosite-18.38.tar.bz2 2993998 diff --git a/sci-biology/prosite/files/digest-prosite-18.39 b/sci-biology/prosite/files/digest-prosite-18.39 new file mode 100644 index 000000000000..cd2c0bb30694 --- /dev/null +++ b/sci-biology/prosite/files/digest-prosite-18.39 @@ -0,0 +1 @@ +MD5 1cbc9e4d8bed13494cfd513c98298b34 prosite-18.39.tar.bz2 2999823 diff --git a/sci-biology/prosite/files/digest-prosite-18.40 b/sci-biology/prosite/files/digest-prosite-18.40 new file mode 100644 index 000000000000..287302f8971c --- /dev/null +++ b/sci-biology/prosite/files/digest-prosite-18.40 @@ -0,0 +1 @@ +MD5 fd7ba3d6b00474d22cc0f3ed12ea986d prosite-18.40.tar.bz2 3021114 diff --git a/sci-biology/prosite/files/digest-prosite-18.41 b/sci-biology/prosite/files/digest-prosite-18.41 new file mode 100644 index 000000000000..0d3e1612952b --- /dev/null +++ b/sci-biology/prosite/files/digest-prosite-18.41 @@ -0,0 +1 @@ +MD5 682d5ce408604a01fa7c6b3c58c3a5b8 prosite-18.41.tar.bz2 3045746 diff --git a/sci-biology/prosite/metadata.xml b/sci-biology/prosite/metadata.xml new file mode 100644 index 000000000000..bd408926e90a --- /dev/null +++ b/sci-biology/prosite/metadata.xml @@ -0,0 +1,19 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>ribosome@gentoo.org</email> + <name>Olivier Fisette</name> + </maintainer> + <herd>sci</herd> + <longdescription> + A protein families and domains database maintained at the Swiss + Institude for Bioinformatics. It consists of biologically significant + sites, patterns and profiles that help to reliably identify to which + known protein family (if any) a new sequence belongs. PROSITE currently + contains patterns and profiles specific for more than a thousand + protein families or domains. Each of these signatures comes with + documentation providing background information on the structure and + function of these proteins. + </longdescription> +</pkgmetadata> diff --git a/sci-biology/prosite/prosite-18.38.ebuild b/sci-biology/prosite/prosite-18.38.ebuild new file mode 100644 index 000000000000..0972736c6ac2 --- /dev/null +++ b/sci-biology/prosite/prosite-18.38.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2004 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-18.38.ebuild,v 1.1 2004/12/23 21:24:44 ribosome Exp $ + +DESCRIPTION="A protein families and domains database" +HOMEPAGE="http://ca.expasy.org/${PN}" +SRC_URI="mirror://gentoo/${P}.tar.bz2" +LICENSE="swiss-prot" +SLOT="0" +KEYWORDS="x86 ~ppc" +IUSE="no-emboss no-rawdb" + +src_compile() { + # Index the database for use with EMBOSS if EMBOSS is installed and + # the user did not explicitly request not to index the database. + if [ -e /usr/bin/prosextract ] && ! use no-emboss; then + mkdir PROSITE + einfo "Indexing PROSITE for usage with EMBOSS." + EMBOSS_DATA=. prosextract -auto -infdat ${S} || die \ + "Indexing PROSITE failed." + fi +} + +src_install() { + if ! use no-rawdb; then + insinto /usr/share/${PN} + doins ${PN}.{doc,dat,lis} + fi + dodoc *.txt + dohtml prosuser.htm + if [ -e /usr/bin/prosextract ] && ! use no-emboss; then + insinto /usr/share/EMBOSS/data/PROSITE + doins PROSITE/* + fi +} diff --git a/sci-biology/prosite/prosite-18.39.ebuild b/sci-biology/prosite/prosite-18.39.ebuild new file mode 100644 index 000000000000..6d049eb5f177 --- /dev/null +++ b/sci-biology/prosite/prosite-18.39.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2004 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-18.39.ebuild,v 1.1 2004/12/23 21:24:44 ribosome Exp $ + +DESCRIPTION="A protein families and domains database" +HOMEPAGE="http://ca.expasy.org/${PN}" +SRC_URI="mirror://gentoo/${P}.tar.bz2" +LICENSE="swiss-prot" +SLOT="0" +KEYWORDS="x86 ~ppc" +IUSE="no-emboss no-rawdb" + +src_compile() { + # Index the database for use with EMBOSS if EMBOSS is installed and + # the user did not explicitly request not to index the database. + if [ -e /usr/bin/prosextract ] && ! use no-emboss; then + mkdir PROSITE + einfo "Indexing PROSITE for usage with EMBOSS." + EMBOSS_DATA=. prosextract -auto -infdat ${S} || die \ + "Indexing PROSITE failed." + fi +} + +src_install() { + if ! use no-rawdb; then + insinto /usr/share/${PN} + doins ${PN}.{doc,dat,lis} + fi + dodoc *.txt + dohtml prosuser.htm + if [ -e /usr/bin/prosextract ] && ! use no-emboss; then + insinto /usr/share/EMBOSS/data/PROSITE + doins PROSITE/* + fi +} diff --git a/sci-biology/prosite/prosite-18.40.ebuild b/sci-biology/prosite/prosite-18.40.ebuild new file mode 100644 index 000000000000..3ccd78d15c51 --- /dev/null +++ b/sci-biology/prosite/prosite-18.40.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2004 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-18.40.ebuild,v 1.1 2004/12/23 21:24:44 ribosome Exp $ + +DESCRIPTION="A protein families and domains database" +HOMEPAGE="http://ca.expasy.org/${PN}" +SRC_URI="mirror://gentoo/${P}.tar.bz2" +LICENSE="swiss-prot" +SLOT="0" +KEYWORDS="x86 ~ppc" +IUSE="no-emboss no-rawdb" + +src_compile() { + # Index the database for use with EMBOSS if EMBOSS is installed and + # the user did not explicitly request not to index the database. + if [ -e /usr/bin/prosextract ] && ! use no-emboss; then + mkdir PROSITE + einfo "Indexing PROSITE for usage with EMBOSS." + EMBOSS_DATA=. prosextract -auto -infdat ${S} || die \ + "Indexing PROSITE failed." + fi +} + +src_install() { + if ! use no-rawdb; then + insinto /usr/share/${PN} + doins ${PN}.{doc,dat,lis} + fi + dodoc *.txt + dohtml prosuser.htm + if [ -e /usr/bin/prosextract ] && ! use no-emboss; then + insinto /usr/share/EMBOSS/data/PROSITE + doins PROSITE/* + fi +} diff --git a/sci-biology/prosite/prosite-18.41.ebuild b/sci-biology/prosite/prosite-18.41.ebuild new file mode 100644 index 000000000000..dd242da9aa71 --- /dev/null +++ b/sci-biology/prosite/prosite-18.41.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2004 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-18.41.ebuild,v 1.1 2004/12/23 21:24:44 ribosome Exp $ + +DESCRIPTION="A protein families and domains database" +HOMEPAGE="http://ca.expasy.org/${PN}" +SRC_URI="mirror://gentoo/${P}.tar.bz2" +LICENSE="swiss-prot" +SLOT="0" +KEYWORDS="~x86 ~ppc" +IUSE="no-emboss no-rawdb" + +src_compile() { + # Index the database for use with EMBOSS if EMBOSS is installed and + # the user did not explicitly request not to index the database. + if [ -e /usr/bin/prosextract ] && ! use no-emboss; then + mkdir PROSITE + einfo "Indexing PROSITE for usage with EMBOSS." + EMBOSS_DATA=. prosextract -auto -infdat ${S} || die \ + "Indexing PROSITE failed." + fi +} + +src_install() { + if ! use no-rawdb; then + insinto /usr/share/${PN} + doins ${PN}.{doc,dat,lis} + fi + dodoc *.txt + dohtml prosuser.htm + if [ -e /usr/bin/prosextract ] && ! use no-emboss; then + insinto /usr/share/EMBOSS/data/PROSITE + doins PROSITE/* + fi +} |