diff options
Diffstat (limited to 'sci-biology/cutg/cutg-150.ebuild')
| -rw-r--r-- | sci-biology/cutg/cutg-150.ebuild | 46 |
1 files changed, 46 insertions, 0 deletions
diff --git a/sci-biology/cutg/cutg-150.ebuild b/sci-biology/cutg/cutg-150.ebuild new file mode 100644 index 000000000000..fbb64869f4bf --- /dev/null +++ b/sci-biology/cutg/cutg-150.ebuild @@ -0,0 +1,46 @@ +# Copyright 1999-2005 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/cutg-150.ebuild,v 1.1 2005/12/13 20:00:17 ribosome Exp $ + +DESCRIPTION="Codon usage tables calculated from GenBank" +LICENSE="public-domain" +HOMEPAGE="http://www.kazusa.or.jp/codon/" +SRC_URI="ftp://ftp.kazusa.or.jp/pub/codon/current/compressed/CUTG.${PV}.tar.gz" + +SLOT="0" +# Minimal build keeps only the indexed files (if applicable) and the +# documentation. The non-indexed database is not installed. +IUSE="emboss minimal" +KEYWORDS="~amd64 ~ppc ~ppc-macos ~ppc64 ~x86" + +DEPEND="emboss? ( sci-biology/emboss )" + +S="${WORKDIR}" + +src_compile() { + if use emboss; then + mkdir CODONS + echo + einfo "Indexing CUTG for usage with EMBOSS." + EMBOSS_DATA="." cutgextract -auto -directory "${S}" || die \ + "Indexing CUTG failed." + echo + fi +} + +src_install() { + if ! use minimal; then + mkdir -p "${D}"usr/share/${PN} + mv *.codon *.spsum "${D}"/usr/share/${PN} || die \ + "Installing raw CUTG database failed." + fi + dodoc README + if use emboss; then + mkdir -p "${D}"/usr/share/EMBOSS/data/CODONS + cd CODONS + for file in *; do + mv ${file} "${D}"/usr/share/EMBOSS/data/CODONS || die \ + "Installing the EMBOSS-indexed database failed." + done + fi +} |