From 021e6aa1318d352ed747a6b126b5cc750c3952ed Mon Sep 17 00:00:00 2001
From: Justin Lecher <jlec@gentoo.org>
Date: Mon, 9 Jul 2012 17:55:40 +0000
Subject: sci-biology/allpathslg: Version bump, fix compilation errors with
 gcc-4.7, #425472

(Portage version: 2.2.0_alpha116/cvs/Linux x86_64)
---
 sci-biology/allpathslg/ChangeLog               |  7 +++++-
 sci-biology/allpathslg/allpathslg-42337.ebuild | 34 ++++++++++++++++++++++++++
 2 files changed, 40 insertions(+), 1 deletion(-)
 create mode 100644 sci-biology/allpathslg/allpathslg-42337.ebuild

(limited to 'sci-biology')

diff --git a/sci-biology/allpathslg/ChangeLog b/sci-biology/allpathslg/ChangeLog
index f1b3747e4344..6568253d00ee 100644
--- a/sci-biology/allpathslg/ChangeLog
+++ b/sci-biology/allpathslg/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/allpathslg
 # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/ChangeLog,v 1.7 2012/05/29 02:51:11 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/ChangeLog,v 1.8 2012/07/09 17:55:40 jlec Exp $
+
+*allpathslg-42337 (09 Jul 2012)
+
+  09 Jul 2012; Justin Lecher <jlec@gentoo.org> +allpathslg-42337.ebuild:
+  Version bump, fix compilation errors with gcc-4.7, #425472
 
 *allpathslg-41839 (29 May 2012)
 
diff --git a/sci-biology/allpathslg/allpathslg-42337.ebuild b/sci-biology/allpathslg/allpathslg-42337.ebuild
new file mode 100644
index 000000000000..c86c7de6d62d
--- /dev/null
+++ b/sci-biology/allpathslg/allpathslg-42337.ebuild
@@ -0,0 +1,34 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/allpathslg-42337.ebuild,v 1.1 2012/07/09 17:55:40 jlec Exp $
+
+EAPI=4
+
+inherit autotools flag-o-matic
+
+DESCRIPTION="De novo assembly of whole-genome shotgun microreads"
+HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd"
+SRC_URI="ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/${P}.tar.gz"
+
+LICENSE="as-is"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64"
+
+DEPEND="dev-libs/boost
+	>=sys-devel/gcc-4.3.3
+	sci-biology/vaal"
+RDEPEND=""
+
+src_prepare() {
+	sed -i 's/-ggdb3//' configure.ac || die
+	eautoreconf
+}
+
+src_install() {
+	einstall || die
+	# Provided by sci-biology/vaal
+	for i in QueryLookupTable ScaffoldAccuracy MakeLookupTable Fastb ShortQueryLookup; do
+		rm "${D}/usr/bin/$i" || die
+	done
+}
-- 
cgit v1.2.3-65-gdbad