# Copyright 1999-2012 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/cufflinks-1.3.0.ebuild,v 1.3 2012/11/10 10:58:55 jlec Exp $ EAPI=4 AUTOTOOLS_AUTORECONF=yes inherit autotools-utils DESCRIPTION="Transcript assembly, differential expression, and differential regulation for RNA-Seq" HOMEPAGE="http://cufflinks.cbcb.umd.edu/" SRC_URI="http://cufflinks.cbcb.umd.edu/downloads/${P}.tar.gz" SLOT="0" LICENSE="Artistic" IUSE="debug" KEYWORDS="~amd64 ~x86" DEPEND=" sci-biology/samtools dev-libs/boost" RDEPEND="${DEPEND}" PATCHES=( "${FILESDIR}"/${P}-autotools.patch "${FILESDIR}"/${P}-boost.patch "${FILESDIR}"/${P}-gcc-4.7.patch ) src_configure() { local myeconfargs=( --disable-optim --with-boost-libdir="${EPREFIX}/usr/$(get_libdir)/" --with-bam="${EPREFIX}/usr/" $(use_enable debug) ) autotools-utils_src_configure }