diff --git a/makefile b/makefile index baaceb5..85a7baf 100755 --- a/makefile +++ b/makefile @@ -70,6 +70,15 @@ OBJDB_G = get_pdb_list.o #OBJDB_Z = blanc2mtz.o libutils.o +# incomplete targets: +# dimer_search_db domain_search_db domain align3 +all: search_db get_structure_db manage_db search_dm dom2ch \ + save_si get_pdb_list_db update_db \ + update_dom_db bl2mtz check_file_db fobs2cif sol_check \ + get_trns p2s check_cell alt_sg \ + align cell_list create_bins \ + get_pdb_list_db get_ch get_nm get_mod + search_db: sdb_l get_structure_db: tdb_l @@ -201,58 +210,58 @@ save_seg_id.o: save_seg_id.f $(BLANC_FORT) -c save_seg_id.f sdb_l: $(OBJDB_S) - $(BLANC_FORT) -o ../bin/search_DB $(OBJDB_S) + $(BLANC_FORT) ${LDFLAGS} -o ../bin/search_DB $(OBJDB_S) tdb_l: $(OBJDB_T) - $(BLANC_FORT) -o ../bin/get_structure_DB $(OBJDB_T) + $(BLANC_FORT) ${LDFLAGS} -o ../bin/get_structure_DB $(OBJDB_T) mdb_l: $(OBJDB_M) - $(BLANC_FORT) -o ../bin/manage_DB $(OBJDB_M) + $(BLANC_FORT) ${LDFLAGS} -o ../bin/manage_DB $(OBJDB_M) mdm_l: $(OBJDB_MD) - $(BLANC_FORT) -o ../bin/search_DOM $(OBJDB_MD) + $(BLANC_FORT) ${LDFLAGS} -o ../bin/search_DOM $(OBJDB_MD) d2c_l: $(OBJDB_A) - $(BLANC_FORT) -o ../bin/domain2chain $(OBJDB_A) + $(BLANC_FORT) ${LDFLAGS} -o ../bin/domain2chain $(OBJDB_A) upd_l: $(OBJDB_U) - $(BLANC_FORT) -o ../bin/update_DB $(OBJDB_U) + $(BLANC_FORT) ${LDFLAGS} -o ../bin/update_DB $(OBJDB_U) dom_l: $(OBJDB_V) - $(BLANC_FORT) -o ../bin/update_domain_DB $(OBJDB_V) + $(BLANC_FORT) ${LDFLAGS} -o ../bin/update_domain_DB $(OBJDB_V) ddb_l: $(OBJDB_D) - $(BLANC_FORT) -o ../bin/dimer_search $(OBJDB_D) + $(BLANC_FORT) ${LDFLAGS} -o ../bin/dimer_search $(OBJDB_D) dmdb_l: $(OBJDB_N) - $(BLANC_FORT) -o ../bin/domain_search $(OBJDB_N) + $(BLANC_FORT) ${LDFLAGS} -o ../bin/domain_search $(OBJDB_N) gdb_l: $(OBJDB_G) - $(BLANC_FORT) -o ../bin/get_pdb_list $(OBJDB_G) + $(BLANC_FORT) ${LDFLAGS} -o ../bin/get_pdb_list $(OBJDB_G) b2m_l: blanc2mtz.o libutils.o - $(BLANC_FORT) -o ../bin/blanc2mtz blanc2mtz.o libutils.o $(CLIB)/libccp4f.a $(CLIB)/libccp4c.a + $(BLANC_FORT) ${LDFLAGS} -o ../bin/blanc2mtz blanc2mtz.o libutils.o -lccp4f -lccp4c f2c_l: f2cif.o libutils.o - $(BLANC_FORT) -o ../bin/f2cif f2cif.o libutils.o + $(BLANC_FORT) ${LDFLAGS} -o ../bin/f2cif f2cif.o libutils.o chf_l: check_file_DB.o libutils.o - $(BLANC_FORT) -o ../bin/check_file_DB check_file_DB.o libutils.o + $(BLANC_FORT) ${LDFLAGS} -o ../bin/check_file_DB check_file_DB.o libutils.o chc_l: check_cell_sg.o libutils.o - $(BLANC_FORT) -o ../bin/check_cell_sg check_cell_sg.o libutils.o + $(BLANC_FORT) ${LDFLAGS} -o ../bin/check_cell_sg check_cell_sg.o libutils.o asl_l: alt_sg_list.o libutils.o - $(BLANC_FORT) -o ../bin/alt_sg_list alt_sg_list.o libutils.o + $(BLANC_FORT) ${LDFLAGS} -o ../bin/alt_sg_list alt_sg_list.o libutils.o sc_l: $(OBJDB_C) - $(BLANC_FORT) -o ../bin/solution_check $(OBJDB_C) + $(BLANC_FORT) ${LDFLAGS} -o ../bin/solution_check $(OBJDB_C) gt_l: $(OBJDB_R) - $(BLANC_FORT) -o ../bin/get_trans $(OBJDB_R) + $(BLANC_FORT) ${LDFLAGS} -o ../bin/get_trans $(OBJDB_R) dmn_l: domain.o libutils.o - $(BLANC_FORT) -o ../bin/domain domain.o libutils.o + $(BLANC_FORT) ${LDFLAGS} -o ../bin/domain domain.o libutils.o pack: pdb_pack.o libutils.o - $(BLANC_FORT) -o ../bin/pdb_pack pdb_pack.o libutils.o + $(BLANC_FORT) ${LDFLAGS} -o ../bin/pdb_pack pdb_pack.o libutils.o p2s_l: $(OBJDB_P) - $(BLANC_FORT) -o ../bin/pdb2s $(OBJDB_P) + $(BLANC_FORT) ${LDFLAGS} -o ../bin/pdb2s $(OBJDB_P) aln_l: align_DB.o DB_subr.o libutils.o - $(BLANC_FORT) -o ../bin/align_DB align_DB.o DB_subr.o libutils.o + $(BLANC_FORT) ${LDFLAGS} -o ../bin/align_DB align_DB.o DB_subr.o libutils.o aln3_l: align_DB_new.o DB_subr.o libutils.o - $(BLANC_FORT) -o ../bin/align_DB_new align_DB_new.o DB_subr.o libutils.o + $(BLANC_FORT) ${LDFLAGS} -o ../bin/align_DB_new align_DB_new.o DB_subr.o libutils.o cell_l: create_cell_list.o DB_subr.o libutils.o - $(BLANC_FORT) -o ../bin/create_cell_list create_cell_list.o DB_subr.o libutils.o + $(BLANC_FORT) ${LDFLAGS} -o ../bin/create_cell_list create_cell_list.o DB_subr.o libutils.o getch_l: get_chain.o DB_subr.o libutils.o - $(BLANC_FORT) -o ../bin/get_chain get_chain.o DB_subr.o libutils.o + $(BLANC_FORT) ${LDFLAGS} -o ../bin/get_chain get_chain.o DB_subr.o libutils.o getnmr_l: get_nmr.o DB_subr.o libutils.o - $(BLANC_FORT) -o ../bin/get_nmr get_nmr.o DB_subr.o libutils.o + $(BLANC_FORT) ${LDFLAGS} -o ../bin/get_nmr get_nmr.o DB_subr.o libutils.o getmod_l: get_model.o libutils.o - $(BLANC_FORT) -o ../bin/get_model get_model.o libutils.o + $(BLANC_FORT) ${LDFLAGS} -o ../bin/get_model get_model.o libutils.o crb_l: create_binaries.o DB_subr.o libutils.o - $(BLANC_FORT) -o ../bin/create_binaries create_binaries.o DB_subr.o libutils.o + $(BLANC_FORT) ${LDFLAGS} -o ../bin/create_binaries create_binaries.o DB_subr.o libutils.o save_si_l: save_seg_id.o DB_subr.o libutils.o - $(BLANC_FORT) -o ../bin/save_seg_id save_seg_id.o DB_subr.o libutils.o + $(BLANC_FORT) ${LDFLAGS} -o ../bin/save_seg_id save_seg_id.o DB_subr.o libutils.o