diff options
Diffstat (limited to 'licenses')
| -rw-r--r-- | licenses/BL | 48 | ||||
| -rw-r--r-- | licenses/MAJESTY-DEMO | 140 | ||||
| -rw-r--r-- | licenses/namd | 144 | ||||
| -rw-r--r-- | licenses/olivia | 8 | ||||
| -rw-r--r-- | licenses/procheck | 230 |
5 files changed, 0 insertions, 570 deletions
diff --git a/licenses/BL b/licenses/BL deleted file mode 100644 index 606d3ef6cef0..000000000000 --- a/licenses/BL +++ /dev/null @@ -1,48 +0,0 @@ -Blender License 1.0 (the "BL", see http://www.blender.org/BL/ ). - -Copyright (C) 2002 Blender Foundation. All Rights Reserved. - -For teams that don't want to operate under the GPL, we're also offering -this "non-GPL" Blender License option. This means that you can download -the latest sources and tools via FTP or CVS from our site and sign an -additional agreement with the Blender Foundation, so you can keep your -source modifications confidential. Contact the Blender Foundation via -email at license@blender.org so we can discuss how we handle the -practical matters. - -A signed agreement allows you to do business with proprietary code, make -special derived versions, sell executables, projects or services, -provided that: - -1. The BL-ed code remains copyrighted by the original owners, and cannot -be transferred to other parties - -2. The BL-ed code cannot be published or re-distributed in any way, and -only be available for the internal staff that works directly on the -software itself. Employees of partners with which you co-develop on the -projects that include BL-ed code are considered 'internal staff' also. - -3. The BL-ed code can be used (sold, distributed) in parts or in its -whole only as an executable or as a compiled library/module and its -header files. - -4. The usage of the name Blender or the Blender logo is not included in -this license. Instead 'including Blender Foundation release X' (or -similar) can be used, with 'X' the version number of the initial Blender -Foundation release which you started with. - -5. Note that this BL has no authority over some of the external -libraries licenses which Blender links with. - -Additionally you get : - -1. The right to use Blender Foundation source updates for a 1 year -period. - -2. Support. Details to be determined by the additional agreement. - -You are invited to donate your proprietary changes back to the open -source community after a reasonable time period. You are of course free -to choose not to do this. - -End of BL terms and conditions. diff --git a/licenses/MAJESTY-DEMO b/licenses/MAJESTY-DEMO deleted file mode 100644 index 7f82374fb991..000000000000 --- a/licenses/MAJESTY-DEMO +++ /dev/null @@ -1,140 +0,0 @@ -End User License Agreement -YOU SHOULD CAREFULLY READ THE FOLLOWING END USER LICENSE AGREEMENT -BEFORE INSTALLING THIS SOFTWARE PROGRAM. BY INSTALLING OR OTHERWISE -USING THE SOFTWARE PROGRAM, YOU AGREE TO BE BOUND BY THE TERMS OF THIS -AGREEMENT. - -This software program (the "Program"), any printed materials, any -on-line or electronic documentation (the "Manuals"), and any and all -copies and derivative works of such software program are the -copyrighted work of Linux Game Publishing LTD and its licensors. All -rights reserved, except as expressly stated herein. All use of the -Program is governed by the terms of this End User License Agreement -("License Agreement"). The Program is solely for use by end users -according to the terms of the Licence Agreement. Any use, reproduction -or redistribution of the Program not in accordance with the terms of -the Licence Agreement is expressly prohibited. - -1. Limited Use License. Linux Game Publishing ("LGP") hereby grants, -and by installing the Program you thereby accept, a limited, -non-exclusive license and right to install and use one (1) copy of the -Program for your use on either a home, business, or portable -computer. The Program is licensed not sold. Your license confers no -title or ownership in the Program. - -2. Ownership. All title, ownership rights and intellectual property -rights in and to the Program and any and all copies thereof (including -but not limited to any titles, computer code, themes, objects, -characters, character names, stories, dialog, catch phrases, -locations, concepts, artwork, animations, sounds, musical -compositions, audio-visual effects, methods of operation, moral -rights, and any related documentation, and "applets" incorporated into -the Program) are owned by LGP and its licensors. The Program is -protected by the copyright laws of the United Kingdom, international -copyright treaties and conventions and other laws. All rights are -reserved. The Program contains certain licensed materials and LGP's -licensors may protect their rights in the event of any violation of -this Agreement. - -3. Responsibilities of End User. -A. Subject to the Grant of License hereinabove, you may not, in whole -or in part, copy, photocopy, reproduce, translate, reverse engineer, -derive source code, modify, disassemble, decompile, create derivative -works based on the Program, or remove any proprietary notices or -labels on the Program without the prior written consent of LGP. -B. The Program is licensed to you as a single product. Its component -parts may not be separated for use on more than one computer. -C. You are entitled to use the Program for your own use, but you are -not entitled to: (i) sell, grant a security interest in or transfer -reproductions of the Program to other parties in any way, nor to rent, -lease or license the Program to others without the prior written -consent of LGP; or (ii) exploit the Program or any of its parts for -any commercial purpose including, but not limited to, use at a cyber -cafe, computer gaming center or any other location-based site. LGP may -offer a separate Site License Agreement to permit you to make the -Program available for commercial use. Contact LGP for details. - -4. Program Transfer. You may transfer all of your rights -under this License Agreement, provided the recipient agrees to the -terms of this License Agreement. - -5. Termination. The License Agreement is effective until -terminated. You may terminate the License Agreement at any time by -destroying the Program. LGP may, at its discretion, terminate this -License Agreement in the event that you fail to comply with the terms -and conditions contained herein. In such event, you must immediately -destroy the Program. - -6. Export Controls. The program may not be re-exported, downloaded, -otherwise exported into (or to a national or resident of) any country -to whom it would be illegal to export the Program under UK law. - -7. Limited Warranty. Except as expressly and unambiguously set forth -in this paragraph 7, LGP and its licensors disclaim any warranty for -the Program, Editor and Manual(s). The Program, Editor and Manual(s) -are provided "as is" without any warranty of any kind, either express -or implied, including, without limitation, the implied warranties of -merchantability, fitness for a particular purpose, or -noninfringement. The entire risk arising out of use or performance of -the Program, Editor, and Manual(s) remains with the User, however LGP -warrants up to and including 90 days from the date of your purchase of -the Program that the media containing the Program shall be free from -defects in material and workmanship. In the event that the media -proves to be defective during that time period, and upon presentation -to LGP of proof of purchase of the defective Program, LGP will at its -option: (i) correct any defect; (ii) provide a replacement copy of the -same product; or (iii) refund your money. - -8. Limitation of Liability. NEITHER LGP, ITS LICENSORS NOR ANY PARENT, -SUBSIDIARY OR AFFILIATE OF THE FOREGOING SHALL BE LIABLE IN ANY WAY -FOR LOSS OR DAMAGE OF ANY KIND RESULTING FROM THE USE OF THE PROGRAM, -EDITOR, AND MANUAL(S) INCLUDING, WITHOUT LIMITATION, LOSS OF GOODWILL, -WORK STOPPAGE, COMPUTER FAILURE OR MALFUNCTION, OR ANY AND ALL OTHER -COMMERCIAL DAMAGES OR LOSSES. - -9. Equitable Remedies. You hereby agree that LGP would be irreparably -damaged if the terms of this License Agreement were not specifically -enforced, and therefore you agree that LGP shall be entitled, without -bond, other security, or proof of damages, to appropriate equitable -remedies with respect to breaches of this License Agreement, in -addition to such other remedies as LGP may otherwise have available to -it under applicable laws. In the event that any litigation is brought -by either party in connection with this License Agreement, the -prevailing party in such litigation shall be entitled to recover from -the other party all the costs, attorney's fees and other expenses -incurred by such prevailing party in the litigation. - -10. Limitations on License. Nothing in this License Agreement shall -preclude you from making or authorizing the making of copies of -the Program provided, however, that all copies are complete and exact -copies of the original, including this license. - -11. Miscellaneous. This License Agreement shall be deemed to have been -made and executed in the United Kingdom and any dispute arising -hereunder shall be resolved in accordance with the laws of the UK. You -agree that any claim asserted in any legal proceeding by one of the -parties against the other shall be commenced and maintained in the -appropriate court located in Nottingham, England, having subject -matter jurisdiction with respect to the dispute between the -parties. This License Agreement may be amended, altered or modified -only by an instrument in writing, specifying such amendment, -alteration or modification, executed by both parties. In the event -that any provision of this License Agreement shall be held by a court -or other tribunal of competent jurisdiction shall be unenforceable, -such provision will be enforced to the maximum extent permissible and -the remaining portions of this License Agreement shall remain in full -force and effect. This License Agreement constituted and contains the -entire agreement between the parties with respect to the subject -matter hereof and supersedes any prior oral or written agreements. You -hereby acknowledge that you have read and understand the forgoing -License Agreement and agree that the action of installing the Program -is an express acknowledgment of your agreement to be bound by the -terms and conditions of this License Agreement. You also acknowledge -and agree that this License Agreement is the complete and exclusive -statement of the agreement between you and LGP and that this License -Agreement supersedes any prior or contemporaneous agreement, either -oral or written, and any other communications between you and LGP. - -Linux Game Publishing LTD -17 Rossington Road -Nottingham, NG2 4HX, England diff --git a/licenses/namd b/licenses/namd deleted file mode 100644 index c1e9d54aa869..000000000000 --- a/licenses/namd +++ /dev/null @@ -1,144 +0,0 @@ -+--------------------------------------------------------------------+ -| | -| University of Illinois | -| NAMD Molecular Dynamics Software | -| Non-Exclusive, Non-Commercial Use License | -| | -+--------------------------------------------------------------------+ - -Upon execution of this Agreement by the party identified below ("Licensee"), -The Board of Trustees of the University of Illinois ("Illinois"), on behalf -of The Theoretical and Computational Biophysics Group ("TCBG") in the Beckman -Institute, will provide the NAMD molecular dynamics software ("NAMD") in -Executable Code and/or Source Code form ("Software") to Licensee, subject to -the following terms and conditions. For purposes of this Agreement, -Executable Code is the compiled code, which is ready to run on Licensee's -computer. Source code consists of a set of files which contain the actual -program commands that are compiled to form the Executable Code. - -1. The Software is intellectual property owned by Illinois, and all right, -title and interest, including copyright, remain with Illinois. Illinois -grants, and Licensee hereby accepts, a restricted, non-exclusive, -non-transferable license to use the Software for academic, research and -internal business purposes only, e.g. not for commercial use (see Clause 7 -below), without a fee. - -2. Licensee may, at its own expense, create and freely distribute -complimentary works that interoperate with the Software, directing others to -the TCBG server to license and obtain the Software itself. Licensee may, at -its own expense, modify the Software to make derivative works. Except as -explicitly provided below, this License shall apply to any derivative work -as it does to the original Software distributed by Illinois. Any derivative -work should be clearly marked and renamed to notify users that it is a -modified version and not the original Software distributed by Illinois. -Licensee agrees to reproduce the copyright notice and other proprietary -markings on any derivative work and to include in the documentation of such -work the acknowledgement: - -"This software includes code developed by the Theoretical and Computational - Biophysics Group in the Beckman Institute for Advanced Science and - Technology at the University of Illinois at Urbana-Champaign." - -Licensee may redistribute without restriction works with up to 1/2 of their -non-comment source code derived from at most 1/10 of the non-comment source -code developed by Illinois and contained in the Software, provided that the -above directions for notice and acknowledgement are observed. Any other -distribution of the Software or any derivative work requires a separate -license with Illinois. Licensee may contact Illinois (namd@ks.uiuc.edu) to -negotiate an appropriate license for such distribution. - -3. Except as expressly set forth in this Agreement, THIS SOFTWARE IS PROVIDED -"AS IS" AND ILLINOIS MAKES NO REPRESENTATIONS AND EXTENDS NO WARRANTIES OF -ANY KIND, EITHER EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO WARRANTIES -OR MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE, OR THAT THE USE OF -THE SOFTWARE WILL NOT INFRINGE ANY PATENT, TRADEMARK, OR OTHER RIGHTS. -LICENSEE ASSUMES THE ENTIRE RISK AS TO THE RESULTS AND PERFORMANCE OF THE -SOFTWARE AND/OR ASSOCIATED MATERIALS. LICENSEE AGREES THAT UNIVERSITY SHALL -NOT BE HELD LIABLE FOR ANY DIRECT, INDIRECT, CONSEQUENTIAL, OR INCIDENTAL -DAMAGES WITH RESPECT TO ANY CLAIM BY LICENSEE OR ANY THIRD PARTY ON ACCOUNT -OF OR ARISING FROM THIS AGREEMENT OR USE OF THE SOFTWARE AND/OR ASSOCIATED -MATERIALS. - -4. Licensee understands the Software is proprietary to Illinois. Licensee -agrees to take all reasonable steps to insure that the Software is -protected and secured from unauthorized disclosure, use, or release and -will treat it with at least the same level of care as Licensee would use to -protect and secure its own proprietary computer programs and/or information, -but using no less than a reasonable standard of care. Licensee agrees to -provide the Software only to any other person or entity who has registered -with Illinois. If licensee is not registering as an individual but as an -institution or corporation each member of the institution or corporation -who has access to or uses Software must agree to and abide by the terms -of this license. If Licensee becomes aware of any unauthorized licensing, -copying or use of the Software, Licensee shall promptly notify Illinois -in writing. Licensee expressly agrees to use the Software only in the -manner and for the specific uses authorized in this Agreement. - -5. By using or copying this Software, Licensee agrees to abide by the -copyright law and all other applicable laws of the U.S. including, but not -limited to, export control laws and the terms of this license. Illinois -shall have the right to terminate this license immediately by written -notice upon Licensee's breach of, or non-compliance with, any -terms of the license. Licensee may be held legally responsible for any -copyright infringement that is caused or encouraged by its failure to -abide by the terms of this license. Upon termination, Licensee agrees to -destroy all copies of the Software in its possession and to verify such -destruction in writing. - -6. The user agrees that any reports or published results obtained with -the Software will acknowledge its use by the appropriate citation as -follows: - -"NAMD was developed by the Theoretical and Computational Biophysics Group in - the Beckman Institute for Advanced Science and Technology at the University - of Illinois at Urbana-Champaign." - -Any published work which utilizes NAMD shall include the following reference: - -"Laxmikant Kale, Robert Skeel, Milind Bhandarkar, Robert Brunner, - Attila Gursoy, Neal Krawetz, James Phillips, Aritomo Shinozaki, - Krishnan Varadarajan, and Klaus Schulten. NAMD2: Greater scalability - for parallel molecular dynamics. J. Comp. Phys., 151:283-312, 1999." - -Electronic documents will include a direct link to the official NAMD page -at http://www.ks.uiuc.edu/Research/namd/ - -7. Commercial use of the Software, or derivative works based thereon, -REQUIRES A COMMERCIAL LICENSE. Should Licensee wish to make commercial -use of the Software, Licensee will contact Illinois (namd@ks.uiuc.edu) to -negotiate an appropriate license for such use. Commercial use includes: -(1) integration of all or part of the Software into a product for sale, -lease or license by or on behalf of Licensee to third parties, or -(2) distribution of the Software to third parties that need it to -commercialize product sold or licensed by or on behalf of Licensee. - -8. Government Rights. Because substantial governmental funds have been -used in the development of NAMD, any possession, use or sublicense of the -Software by or to the United States government shall be subject to such -required restrictions. - -9. NAMD is being distributed as a research and teaching tool and as -such, TCBG encourages contributions from users of the code that might, at -Illinois' sole discretion, be used or incorporated to make the basic -operating framework of the Software a more stable, flexible, and/or useful -product. Licensees who contribute their code to become an internal -portion of the Software agree that such code may be distributed by -Illinois under the terms of this License and may be required to sign an -"Agreement Regarding Contributory Code for NAMD Software" before Illinois -can accept it (contact namd@ks.uiuc.edu for a copy). - -UNDERSTOOD AND AGREED. - - -Contact Information: - -The best contact path for licensing issues is by e-mail to -namd@ks.uiuc.edu or send correspondence to: - NAMD Team - Theoretical and Computational Biophysics Group - Beckman Institute - University of Illinois - 405 North Mathews MC-251 - Urbana, Illinois 61801 USA - FAX: (217) 244-6078 - diff --git a/licenses/olivia b/licenses/olivia deleted file mode 100644 index f8e85f490ef8..000000000000 --- a/licenses/olivia +++ /dev/null @@ -1,8 +0,0 @@ -Relating organizations and author have No liability for any loss of profits -whatever arising from the use of this product. Permission to use and copy this -software and its documentation is hereby granted. -This software is free to be modified only for academic purpose and personal use. -However, We do Not assume responsibility for any personally customized versions. - - Copyright (c) 2010 Olivia Developer Team, Hokkaido University. - diff --git a/licenses/procheck b/licenses/procheck deleted file mode 100644 index 793379cc3cf8..000000000000 --- a/licenses/procheck +++ /dev/null @@ -1,230 +0,0 @@ - - - PROCHECK - Stereochemical Quality of Protein Structures - ------------------------------------------------------- - and AQUA for PROCHECK-NMR - ------------------------- - - CONFIDENTIALITY AGREEMENT - ------------------------- - - - -In regard to the PROCHECK suite of programs, specified in Appendix 1 -herewith and the AQUA suite of programs specified in Appendix 2 herewith -(the Software) supplied to us, the copyright and other intellectual -property rights to which belong to the authors, we - - __________________________________________________________________ - -undertake to the authors that we shall be bound by the following terms and -conditions:- - -1. We will receive the Software and any related documentation in confidence -and will not use the same except for the purpose of the department's own -research. The Software will be used only by such of our officers or -employees to whom it must reasonably be communicated to enable us to -undertake our research and who agree to be bound by the same confidence. -The department shall procure and enforce such agreement from its staff for -the benefit of the authors. - -2. The publication of research using the Software must reference - - "Laskowski R A, MacArthur M W, Moss D S & Thornton J M (1993). PROCHECK: - a program to check the stereochemical quality of protein - structures. J. Appl. Cryst., 26, 283-291." - -and - - "Rullmann J A C (1996). AQUA, Computer Program, Department of NMR - Spectroscopy, Bijvoet Center for Biomolecular Research, Utrecht - University, The Netherlands." - - -3. Research shall take place solely at the department's premises at - - __________________________________________________________________ - -4. All forms of the Software will be kept in a reasonably secure place to -prevent unauthorised access. - -5. Each copy of the Software or, if not practicable then, any package -associated therewith shall be suitably marked (and such marking maintained) -with the following copyright notice: " Copyright 1992 M W MacArthur, R A -Laskowski, D S Moss, J A C Rullmann & J M Thornton All Rights Reserved". - -6. The Software may be modified but any changes made shall be made -available to the authors. - -7. The Software shall be used exclusively for academic teaching and -research. The Software will not be used for any commercial research or -research associated with an industrial company. - -8. The confidentiality obligation in paragraph one shall not apply: - - (i) to information and data known to the department at the time of - receipt hereunder (as evidenced by its written records); - - (ii) to information and data which was at the time of receipt in the - public domain or thereafter becomes so through no wrongful act of - the department; - - (iii) to information and data which the department receives from a third - party not in breach of any obligation of confidentiality owed to - the authors. - - - -Please sign this Undertaking and return a copy of it to indicate that you -have read, understood and accepted the above terms. - - - - For and on behalf of _____________________________ - - _________________________________________________ - - .................................................. - - Dated ............................................ - - - - -APPENDIX 1 - DETAILS OF THE PROCHECK SUITE OF PROGRAMS PROVIDED (v.3.4.3) ---------------------------------------------------------------- - -Files to be included --------------------- - - 1. anglen.f } - 2. anglen.inc } - 3. bplot.f } - 4. bplot.inc } - 5. brkcln.par } - 6. clean.f } - 7. gfac2pdb.f } - 8. gfac2pdb.inc } - 9. mplot.f } - 10. mplot.inc } Source program files - 11. nb.c } - 12. pplot.f } - 13. pplot.inc } - 14. ps.f } - 15. rmsdev.f } - 16. rmsdev.inc } - 17. secstr.f } - 18. sstruc.par } - 19. tplot.f } - 20. tplot.inc } - 21. viol2pdb.f } - 22. viol2pdb.inc } - 23. vplot.f } - 24. vplot.inc } - 25. gfac2pdb.scr } - 26. procheck.com } - 27. procheck.scr } - 28. procheck_comp.com } - 29. procheck_comp.scr } - 30. procheck_nmr.scr } - 31. proplot.com } - 32. proplot.scr } Script files - 33. proplot_comp.scr } - 34. proplot_nmr.scr } - 35. proplot_comp.com } - 36. prosub.com } - 37. setup.com } - 38. setup.scr } - 39. viol2pdb.scr } - 40. convax.for } - 41. procomp.com } Installation files - 42. procomp.scr } - 43. maninst.ps } - 44. manual.tar.Z } Documentation files - 45. nmr_manual.tar.Z } - 46. procheck.dat } - 47. procheck.prm } Data - 48. procheck_comp.prm } files - 49. procheck_nmr.prm } - - -APPENDIX 2 - DETAILS OF THE AQUA SUITE OF PROGRAMS PROVIDED (v.0.40) ------------------------------------------------------------ - -Files to be included --------------------- - -Source files:- ------------- - -AquaCalc.c AquaCalc.h - AquaData.h -AquaDist.c AquaDist.h -AquaFiles.c AquaFiles.h -AquaFuncts.c AquaFuncts.h -AquaFuncts_biosym.c AquaFuncts_biosym.h -AquaFuncts_cv.c AquaFuncts_cv.h -AquaFuncts_io.c AquaFuncts_io.h -AquaFuncts_pdb.c AquaFuncts_pdb.h -AquaFuncts_pdbmr.c AquaFuncts_pdbmr.h -AquaHow.c AquaHow.h - AquaMacros.h -AquaPseudo.c AquaPseudo.h -AquaStrucset.c AquaStrucset.h - AquaTypes.h -AquaWhat.c AquaWhat.h -Qext.c Qext.h -Range.c Range.h - cv_subs.h - -Script files:- ------------- -ReadNrv.pm* convDIANAtorsrestr qdbext* -aqdrst* convDISGEOdistrestr qguessc* -aqpc* convDISGEOtorsrestr qguessr* -aqpcsel convMRTABLE qhelp* -aquanal.pl* convXPLORdistrestr qmodr* -clean0* convXPLORtorsrestr qsplitr* -convBIOSYMdistrestr makecmm* qsumm* -convBIOSYMtorsrestr qconvert* qsumm_aux1* -convDIANAdistrestr qconvr* qsumm_aux2* - -Documentation:- -------------- -README models.txt qconvr.txt -aqpc.txt mr.txt qdbext.txt -aqua_setup.txt names.txt qext.txt -biosym.txt overview.txt qhelp.txt -chains.txt perl.txt qsumm.txt -conversion.txt procheck.txt restraint_format.txt -dbas.txt qanal.txt setup.txt -intro.txt qclean.txt torsion.txt -log.txt qconvert.txt xplor.txt - -Extras:- ------- -joinpdb* splitpdb* - - - -Please complete the above form, sign it, and then send or fax to:- - - -Roman Laskowski -European Bioinformatics Institute, -Wellcome Trust Genome Campus, -Hinxton, -Cambridge, CB10 1SD, -United Kingdom - -Fax:- +44 (0)1223 494 468 - -If you have any problems either installing the software or running it, -please e-mail your problems to:- - - roman@ebi.ac.uk - -Questions about AQUA should be directed to Ton Rullmann at - - rull@nmr.chem.ruu.nl - |