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Diffstat (limited to 'sci-biology/emboss/files/emboss-README.Gentoo-2')
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diff --git a/sci-biology/emboss/files/emboss-README.Gentoo-2 b/sci-biology/emboss/files/emboss-README.Gentoo-2 deleted file mode 100644 index 72fa3662c9a8..000000000000 --- a/sci-biology/emboss/files/emboss-README.Gentoo-2 +++ /dev/null @@ -1,34 +0,0 @@ -Administrating EMBOSS on Gentoo systems -======================================= - - -Codon data files location -------------------------- - -The codon data files that are distributed with EMBOSS are installed in the -``EPREFIX/usr/share/EMBOSS/data/CODONS.orig`` directory instead of the usual -``EPREFIX/usr/share/EMBOSS/data/CODONS``. This is done to avoid confusion between -these codon files and those installed with the CUTG database. The names of -these files sometimes vary only by their case. Having both sets of files in -the same directory is also impossible on systems such as MacOSX, where the -root filesystem is case insensitive. If you do not have the CUTG database -installed and want to use the codon files distributed with EMBOSS, you can -symlink the ``CODONS.orig`` directory to ``CODONS``:: - - # cd EPREFIX/usr/share/EMBOSS/data - # ln -s CODONS.orig CODONS - - -Restriction enzymes equivalence file location ---------------------------------------------- - -The restriction enzymes equivalence file distributed with EMBOSS is installed -as ``EPREFIX/usr/share/EMBOSS/data/embossre.equ.orig`` rather than the usual -``EPREFIX/usr/share/EMBOSS/data/embossre.equ``. This is done to avoid a file -collision with the equivalence file provided by the Rebase database. If you do -not have the Rebase database installed and want to use the equivalence file -distributed with EMBOSS, you can symlink the ``embossre.equ.orig`` file to -``embossre.equ``:: - - # cd EPREFIX/usr/share/EMBOSS/data - # ln -s embossre.equ.orig embossre.equ |