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* sci-libs/ogdi: x86 stable wrt bug #716928Agostino Sarubbo2020-04-131-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/iml: x86 stable wrt bug #717272Agostino Sarubbo2020-04-131-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/gdal: Drop 2.4.1-r1 and 2.4.3Andreas Sturmlechner2020-04-1310-1064/+0
| | | | | | Bug: https://bugs.gentoo.org/699838 Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/iml: amd64 stable wrt bug #717272Agostino Sarubbo2020-04-131-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/iml: use HTTPS and drop RESTRICT=mirror.Michael Orlitzky2020-04-121-5/+3
| | | | | | | | | | | The HOMEPAGE and SRC_URI redirect to HTTPS anyway, so let's use it right off the bat. And RESTRICT=mirror doesn't seem needed after perusing the source. Since this ebuild was imported from an overlay, I feel relatively confident that I'm not doing anything wrong by removing it. Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/ogdi: amd64 stable wrt bug #716928Agostino Sarubbo2020-04-121-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/ogdi: ppc64 stable wrt bug #716928Agostino Sarubbo2020-04-111-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="ppc64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/ogdi: ppc stable wrt bug #716928Agostino Sarubbo2020-04-111-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="ppc" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/gdal: arm64 stable (bug #699838)Mart Raudsepp2020-04-111-1/+1
| | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Mart Raudsepp <leio@gentoo.org>
* sci-libs/ogdi: arm64 stable (bug #716928)Mart Raudsepp2020-04-101-1/+1
| | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Mart Raudsepp <leio@gentoo.org>
* sci-libs/umfpack: fix build with USE=docBernd Waibel2020-04-101-0/+5
| | | | | | | | | Add a src_compile() function needed to build pkfonts, if USE=doc is enabled. Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Bernd Waibel <waebbl@gmail.com> Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/ogdi: 4.1.0 version bumpAndreas Sturmlechner2020-04-103-0/+85
| | | | | | | Bug: https://bugs.gentoo.org/699838 Closes: https://bugs.gentoo.org/706190 Package-Manager: Portage-2.3.98, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/m4ri: New release with all patches included.François Bissey2020-04-102-0/+47
| | | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: François René Pierre Bissey <frp.bissey@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/15262 Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/libgeotiff: Drop 1.4.1-r1Andreas Sturmlechner2020-04-102-65/+0
| | | | | Package-Manager: Portage-2.3.98, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/libgeotiff: arm64 stable (bug #706442)Mart Raudsepp2020-04-101-1/+1
| | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Mart Raudsepp <leio@gentoo.org>
* sci-libs/ceres-solver: fix CI issuesBernd Waibel2020-04-091-8/+8
| | | | | | | | | - address MissingUseDepDefault and DeprecatedInsinto issues from pkgcheck - remove slot and subslot operator on dependencies without slots Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Bernd Waibel <waebbl@gmail.com> Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/ceres-solver: fix CI issueBernd Waibel2020-04-091-7/+7
| | | | | | | | | | - address the MissingUseDepDefault issue form pkgcheck - remove slot and subslot operators on deps without slots Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Bernd Waibel <waebbl@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/15204 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/cddlib: ppc stable wrt bug #716360Agostino Sarubbo2020-04-081-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="ppc" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/scikits_learn: bug fixAndrew Ammerlaan2020-04-071-2/+1
| | | | | | | | | | fixes missing IUSE="examples" bug Closes: https://bugs.gentoo.org/716016 Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net> Closes: https://github.com/gentoo/gentoo/pull/15215 Signed-off-by: Patrick McLean <chutzpah@gentoo.org>
* sci-libs/cddlib: amd64 stable wrt bug #716360Agostino Sarubbo2020-04-071-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* Revert "sci-libs/adolc: drop old"Matthias Maier2020-04-063-0/+63
| | | | | | This reverts commit c124472bf2e70c44ddcb5f4bdbe67ae16777c193. Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/tensorflow-estimator: add rules_cc distfile for bazel 2.0Jason Zaman2020-04-073-2/+8
| | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* sci-libs/tensorflow: replace python_export with python_get_sitedirJason Zaman2020-04-074-20/+12
| | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* sci-libs/adolc: drop oldMatthias Maier2020-04-063-63/+0
| | | | | Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/adolc: version bump to 2.7.2Matthias Maier2020-04-062-0/+62
| | | | | | | Upstream has released a new version after 3 years. Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/adolc: live ebuild: update repository, EAPI 7Matthias Maier2020-04-061-8/+6
| | | | | Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/libgeotiff: Fix tests with >=sci-libs/proj-6.2Andreas Sturmlechner2020-04-062-0/+59
| | | | | Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/geos: Drop 3.7.2Andreas Sturmlechner2020-04-053-76/+0
| | | | | Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/geos: arm64 stable (bug #707516)Mart Raudsepp2020-04-051-1/+1
| | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Mart Raudsepp <leio@gentoo.org>
* sci-libs/vtk: Fix wrong installation path for libQVTKWidgetPlugin.soRafael Palomar2020-04-051-1/+1
| | | | | | | | | | This fixes the wrong installation path of libQVTKWidgetPlugin.so. From /usr/usr/... --> /usr/... Closes: https://bugs.gentoo.org/646422 Signed-off-by: Rafael Palomar Ávalos <rafael.palomar@rr-research.no> Closes: https://github.com/gentoo/gentoo/pull/15218 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/vtk: Fix installation path for CMake filesRafael Palomar2020-04-051-0/+1
| | | | | | | | | | | | | On amd64, installation will drop files in /usr/lib64 except for CMake files which will be installed on /usr/lib. This fixes the installation path for the CMake files (/usr/lib64). Revision bump vtk-8.1.0-r4 --> vtk-8.1.0-r5 Signed-off-by: Rafael Palomar Ávalos <rafael.palomar@rr-research.no> Closes: https://github.com/gentoo/gentoo/pull/15213 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/suitesparse: new version 5.4.0.Michael Orlitzky2020-04-042-4/+42
| | | | | | | | | | | | | | | | | All of the individual suitesparse components have been updated, but I didn't realize there was a metapackage. And the 4.x versions of the metapackage have incorrect dependencies that are trying to pull in the components that belong to suitesparse-5.4.0. This is producing some confusing errors. This commit adds a new version of the metapackage with correct dependencies (tied to the versions of the components that ship with suitesparse-5.4.0), and should let ~arch users upgrade everything after switching from USE=metis to USE=partition. At some later point, we can prune the 4.x metapackage and components and be dont with that. Bug: https://bugs.gentoo.org/711610 Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* */*: Drop stable ia64 keywordsMatt Turner2020-04-0322-22/+22
| | | | Signed-off-by: Matt Turner <mattst88@gentoo.org>
* sci-libs/fflas-ffpack: new package for finite-field linear algebra.Michael Orlitzky2020-04-034-0/+190
| | | | | | | | | | | | | | | | | | | | | | | This is a straightforward import of the latest fflas-ffpack-2.4.3.ebuild that François Bissey has been maintaining in the sage-on-gentoo overlay, with only a few minor changes: * I added a "+" to the LICENSE to match the upstream LGPL-2.1+. * I switched the openmp check to use tc-check-openmp() conditionally on the MERGE_TYPE variable. * Added BDEPEND="virtual/pkgconfig" since we patch in a call to PKG_CHECK_MODULES. I also removed a warning about build failures with USE=openmp. From what I can tell, this stems from an older report (upstream Github issue 48) using gcc-4.9.x that was never fully debugged. If the problems persist, we can revisit that report, or just mask the flag. Closes: https://bugs.gentoo.org/show_bug.cgi?id=715678 Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/scikits_learn-0.22.2_p1: Version bumpPatrick McLean2020-04-022-0/+81
| | | | | | Copyright: Sony Interactive Entertainment Inc. Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Patrick McLean <chutzpah@gentoo.org>
* sci-libs/openlibm: version bump to 0.7.0Jeffrey Lin2020-04-022-0/+24
| | | | | Signed-off-by: Jeffrey Lin <jeffrey@icurse.nl> Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/scikits-0.1-r2: add python3_8Patrick McLean2020-04-021-1/+1
| | | | | | Copyright: Sony Interactive Entertainment Inc. Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Patrick McLean <chutzpah@gentoo.org>
* sci-libs/opencascade: drop oldBernd Waibel2020-04-016-227/+0
| | | | | | | Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Bernd Waibel <waebbl@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/15140 Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/opencascade: fix unused cmake variableBernd Waibel2020-04-011-2/+7
| | | | | | | Closes: https://bugs.gentoo.org/710694 Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Bernd Waibel <waebbl@gmail.com> Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/geos: arm stable wrt bug #707516Agostino Sarubbo2020-03-311-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="arm" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/proj: arm64 stable (bug #706146)Mart Raudsepp2020-03-291-1/+1
| | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Mart Raudsepp <leio@gentoo.org>
* sci-libs/cartopy: New packageThomas Beierlein2020-03-293-0/+81
| | | | | Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Thomas Beierlein <tomjbe@gentoo.org>
* sci-libs/fftw: fix build with mpichChristoph Junghans2020-03-292-20/+196
| | | | | | Closes: https://bugs.gentoo.org/699650 Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Christoph Junghans <junghans@gentoo.org>
* sci-libs/tensorflow: bump 2.2.0_rc2Jason Zaman2020-03-292-0/+381
| | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* sci-libs/libgeodecomp: Fix compile issues against hpx v1.4Kurt Kanzenbach2020-03-283-1/+282
| | | | | | | | | | Adding patches to fix compile issues and warnings against >=sys-cluster/hpx-1.4. Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Kurt Kanzenbach <kurt@kmk-computers.de> Closes: https://github.com/gentoo/gentoo/pull/15137 Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/libgeodecomp: Drop oldKurt Kanzenbach2020-03-286-388/+0
| | | | | | | | | | | | Reason: It's quite old and would require to maintain lots of other old libraries versions of cuda, hpx, libflatarray... I'd recommend to use the pre 0.5.0 version to get all the newest features anyway. Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Kurt Kanzenbach <kurt@kmk-computers.de> Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/geos: --disable-inline with armAndreas Sturmlechner2020-03-282-3/+9
| | | | | | Bug: https://bugs.gentoo.org/709368 Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* */*: Discontinue Gentoo SuperH portMikle Kolyada2020-03-266-9/+9
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --ignore-arches Signed-off-by: Mikle Kolyada <zlogene@gentoo.org>
* sci-libs/gdal: Restrict to <app-text/poppler-0.85.0Andreas Sturmlechner2020-03-261-1/+1
| | | | | | Closes: https://bugs.gentoo.org/714826 Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/geos: 3.8.1 version bumpAndreas Sturmlechner2020-03-262-0/+51
| | | | | Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>