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* sci-libs/indilib: drop 2.0.4Andreas Sturmlechner2024-04-092-82/+0
| | | | Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/linbox: Stabilize 1.7.0 amd64, #929008Arthur Zamarin2024-04-091-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/givaro: Stabilize 4.2.0 amd64, #929008Arthur Zamarin2024-04-091-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/fflas-ffpack: Stabilize 2.5.0-r1 amd64, #929008Arthur Zamarin2024-04-091-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/xylib: add missing remote-idMichael Mair-Keimberger2024-04-081-3/+4
| | | | | Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/ogdi: add missing remote-idMichael Mair-Keimberger2024-04-081-0/+1
| | | | | Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/nlopt: add missing remote-idMichael Mair-Keimberger2024-04-081-11/+14
| | | | | Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/nemesis: update remote-idMichael Mair-Keimberger2024-04-081-11/+11
| | | | | Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/exodusii: update remote-idMichael Mair-Keimberger2024-04-081-4/+4
| | | | | Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/hdf: update EAPI 7 -> 8Eli Schwartz2024-04-081-1/+1
| | | | | Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hdf: mark as LTO-unsafe, strict-aliasing unsafeEli Schwartz2024-04-081-0/+8
| | | | | | | | | | | | I cannot tell whether it's still a problem upstream. Too many catastrophes going on in this codebase right now. Not going to report it when I have no clue. Maybe if it could be updated for a better baseline... Closes: https://bugs.gentoo.org/862720 Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hdf: drop painful dead weightEli Schwartz2024-04-082-5/+33
| | | | | | | | | | | | | | | I am not fighting with Modern C more than I have to, so just prune this. The key here is that upstream hdf4 doesn't support it and doesn't want you using it, because it appears to just be an uplifted copy of netcdf code. So why not, erm, just use netcdf? Good question, and this package doesn't have an answer to that. Yeet these vendored tools into the sunset. No need to rename them to private copies. Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hdf: big fat gobs of Modern C backportingEli Schwartz2024-04-082-1/+375
| | | | | | | | | | | | | | | | | | | | | | Ideally I would like to solve this by updating to a new upstream release. Unfortunately, that has a combination of complications: - existing patches don't apply - upstream changed download site - upstream changed up the codebase quite a bit, and notes: - XDR is now minimalist internals, and renamed - lots of internal headers were dropped, which "may cause codebases to stop compiling, so we are bumping the minor version" It apparently constitutes a major version. Surprisingly, porting individual Modern C fixes from upstream is *less* work. This message was sponsored by Big Science. Much gratitude. <3 Closes: https://bugs.gentoo.org/874414 Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/h5part: update HOMEPAGEEli Schwartz2024-04-081-2/+2
| | | | | | | | | The upstream website is dead. There is a gitlab that seems to contain a 2.0.0 version totally unrelated to the current codebase, but only release candidates of it. Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/vtk: Stabilize 9.3.0 amd64, #925018Arthur Zamarin2024-04-061-2/+2
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/indilib: Stabilize 2.0.6 amd64, #926333Arthur Zamarin2024-04-061-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/tokenizers: add 0.15.2Alfredo Tupone2024-04-052-0/+502
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/huggingface_hub: add 0.21.4Alfredo Tupone2024-04-052-0/+32
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/ogdi: Fix C99 errorsNHOrus2024-04-052-1/+23
| | | | | | | Closes: https://bugs.gentoo.org/886460 Signed-off-by: NHOrus <jy6x2b32pie9@yahoo.com> Closes: https://github.com/gentoo/gentoo/pull/36095 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/datasets: pytorch must be built with numpy supportAlfredo Tupone2024-04-051-1/+1
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/huggingface_hub: add 0.20.3, drop 0.19.4Alfredo Tupone2024-04-052-1/+1
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/indilib: Keyword 2.0.6 ppc64, #926356Arthur Zamarin2024-04-041-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/indilib: Keyword 2.0.6 ppc, #926356Arthur Zamarin2024-04-041-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/caffe2: disable py3.9Alfredo Tupone2024-04-041-4/+4
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/lapack: Stabilize 3.12.0-r1 hppa, #923553Matoro Mahri2024-04-041-1/+1
| | | | | Signed-off-by: Matoro Mahri <matoro_gentoo@matoro.tk> Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/pytorch: disable py3.9Alfredo Tupone2024-04-041-1/+1
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/pytorch: add 2.2.2, drop 2.2.1Alfredo Tupone2024-04-042-2/+2
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/caffe2: drop 2.2.1-r1Alfredo Tupone2024-04-042-270/+0
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/caffe2: add 2.2.2Alfredo Tupone2024-04-042-0/+270
| | | | | Closes: https://bugs.gentoo.org/928339 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/gloo: addpredict for cudaAlfredo Tupone2024-04-021-0/+2
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/netcdf: cmake rework, fix bug 886155Paul Zander2024-04-022-1/+105
| | | | | | | | | | | Remove cmake automagic for file filters. Make test run in parallel that failed due to mpi failures. Filter cmake targets file further. Closes: https://bugs.gentoo.org/886155 Signed-off-by: Paul Zander <negril.nx+gentoo@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/35786 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/netcdf-fortran: mark as LTO-unsafeEli Schwartz2024-04-013-3/+18
| | | | | | Closes: https://bugs.gentoo.org/927588 Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/lis: add missing dep for switch to zip distfileEli Schwartz2024-04-011-0/+1
| | | | | | | | | Dunno why upstream had to change. :( Also dunno why PMS doesn't use libarchive. :( Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/dcmtk: update LTO comment (fixed upstream in git!)Sam James2024-04-011-2/+1
| | | | | | | Thank you dcmtk maintainers :) Bug: https://bugs.gentoo.org/862699 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/lis: add 2.1.3Eli Schwartz2024-04-013-0/+493
| | | | | | | | | Current release is from 2016. Try to rebase onto a newer release. Does not fix LTO, unfortunately. Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/lis: update EAPI 6 -> 8Eli Schwartz2024-04-011-1/+1
| | | | | Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/lis: mark as LTO-unsafeEli Schwartz2024-04-011-2/+7
| | | | | | Closes: https://bugs.gentoo.org/927587 Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/caffe2: disable py3.9Alfredo Tupone2024-03-301-1/+1
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/caffe2: addpredict /proc/self/taskAlfredo Tupone2024-03-301-0/+1
| | | | | Closes: https://bugs.gentoo.org/926116 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/givaro: fix build with gcc-14Michael Orlitzky2024-03-302-0/+32
| | | | | | | There was already an upstream patch for this that I missed. Closes: https://bugs.gentoo.org/928020 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/volk: add 3.1.2Rick Farina2024-03-292-0/+59
| | | | Signed-off-by: Rick Farina <zerochaos@gentoo.org>
* sci-libs/libticalcs2: fix erroneous bashism during buildingEli Schwartz2024-03-292-0/+44
| | | | | | | | | | | * QA Notice: Abnormal configure code * * checking for the host compiler... ./configure: 17678: test: xx86_64-pc-linux-gnu: unexpected operator Bug: https://github.com/debrouxl/tilibs/pull/87 Closes: https://bugs.gentoo.org/723452 Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libticalcs2: update EAPI 6 -> 8Eli Schwartz2024-03-291-3/+5
| | | | | Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libticalcs2: mark as LTO-unsafeEli Schwartz2024-03-291-2/+6
| | | | | | Closes: https://bugs.gentoo.org/927586 Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/ignition-fuel-tools: drop 4.4.0Andreas Sturmlechner2024-03-272-45/+0
| | | | Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/getdata: fix bashisms in configureSam James2024-03-272-0/+67
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/getdata: add libltdl depSam James2024-03-272-1/+3
| | | | | Closes: https://bugs.gentoo.org/923316 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/getdata: mark as LTO-unsafeEli Schwartz2024-03-271-1/+7
| | | | | Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/getdata: add github upstream metadataEli Schwartz2024-03-271-0/+1
| | | | | | | | | | In theory the sourceforge site claims to be defunct. In practice the github repo is abandoned immediately after switching too... https://sourceforge.net/p/getdata/code/1178/ Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/netcdf-cxx: make sure elibtoolize is appliedEli Schwartz2024-03-273-3/+24
| | | | | | | | | | Since the libtool available for 4.2 is very old, that means running a full eautoreconf. Needed to e.g. pass LTO warning flags through to the linker. Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>