From ccce71a38571bf752f650f36417cb50fb69edaa8 Mon Sep 17 00:00:00 2001
From: David Seifert <soap@gentoo.org>
Date: Fri, 24 May 2024 10:44:40 +0200
Subject: sci-biology/raxml: drop 7.2.6

Closes: https://bugs.gentoo.org/822408
Closes: https://bugs.gentoo.org/831489
Signed-off-by: David Seifert <soap@gentoo.org>
---
 sci-biology/raxml/Manifest                         |  1 -
 sci-biology/raxml/files/raxml-7.2.6-makefile.patch | 29 -----------------
 sci-biology/raxml/raxml-7.2.6.ebuild               | 37 ----------------------
 3 files changed, 67 deletions(-)
 delete mode 100644 sci-biology/raxml/files/raxml-7.2.6-makefile.patch
 delete mode 100644 sci-biology/raxml/raxml-7.2.6.ebuild

diff --git a/sci-biology/raxml/Manifest b/sci-biology/raxml/Manifest
index 648666691355..56416ac10d7f 100644
--- a/sci-biology/raxml/Manifest
+++ b/sci-biology/raxml/Manifest
@@ -1,2 +1 @@
-DIST RAxML-7.2.6.tar.bz2 202803 BLAKE2B 579676ff9fad1563eabb9507015acff010977a89ae087df9b828b80bc9352ed44c98faeaf4c8d884ffa14176bfa28772dc9872ad8b5d401aff8b834c728e5f65 SHA512 b0027a7e583e6471a774d9e784a0be1ff63b3824a8cfbebca68bf9e414adab297206ea2d43c9b97456e6acc0a6a15f55ca33983381dd6150f9e7ea71ddecdcd3
 DIST raxml-8.2.13.tar.gz 10201721 BLAKE2B ee48dc599947619d12a54cafef1eee554abc0df30a31ba2fdb501b228dadec9f137acff8f472047f4686304f74d27893696c95ff808baa128c2c3d83539366a1 SHA512 c99dc3f8c8798cda38c644501f474c0261e72c1f3b64d594d5006fa03e8d8c4da3bdf20b8e3c6c9f669c9509d5af27a0c286a2570a54c8ff7df7cd63c1f78885
diff --git a/sci-biology/raxml/files/raxml-7.2.6-makefile.patch b/sci-biology/raxml/files/raxml-7.2.6-makefile.patch
deleted file mode 100644
index 6b82ed65b770..000000000000
--- a/sci-biology/raxml/files/raxml-7.2.6-makefile.patch
+++ /dev/null
@@ -1,29 +0,0 @@
- Makefile.gcc |    6 +++---
- 1 files changed, 3 insertions(+), 3 deletions(-)
-
-diff --git a/Makefile.gcc b/Makefile.gcc
-index 716b6c6..f0c1de2 100644
---- a/Makefile.gcc
-+++ b/Makefile.gcc
-@@ -1,10 +1,10 @@
- # Makefile August 2006 by Alexandros Stamatakis
- # Makefile cleanup October 2006, Courtesy of Peter Cordes <peter@cordes.ca>
- 
--CC = gcc 
-+CC ?= gcc 
- 
- 
--CFLAGS = -D_GNU_SOURCE  -fomit-frame-pointer -funroll-loops -O2 -msse
-+CPPFLAGS += -D_GNU_SOURCE
- 
- 
- 
-@@ -19,7 +19,7 @@ all : raxmlHPC
- GLOBAL_DEPS = axml.h globalVariables.h
- 
- raxmlHPC : $(objs)
--	$(CC) -o raxmlHPC $(objs) $(LIBRARIES) 
-+	$(CC) $(LDFLAGS) -o raxmlHPC $(objs) $(LIBRARIES) $(LIBS)
- 
- classify.o : classify.c $(GLOBAL_DEPS)
- evaluatePartialSpecialGeneric.o : evaluatePartialSpecialGeneric.c $(GLOBAL_DEPS)
diff --git a/sci-biology/raxml/raxml-7.2.6.ebuild b/sci-biology/raxml/raxml-7.2.6.ebuild
deleted file mode 100644
index adb044426381..000000000000
--- a/sci-biology/raxml/raxml-7.2.6.ebuild
+++ /dev/null
@@ -1,37 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit flag-o-matic toolchain-funcs
-
-DESCRIPTION="Sequential, Parallel & Distributed Inference of Large Phylogenetic Trees"
-HOMEPAGE="http://wwwkramer.in.tum.de/exelixis/software.html"
-SRC_URI="http://wwwkramer.in.tum.de/exelixis/software/RAxML-${PV}.tar.bz2"
-S="${WORKDIR}/RAxML-${PV}"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="cpu_flags_x86_sse3 +threads"
-REQUIRED_USE="cpu_flags_x86_sse3"
-
-# mpi is not supported in version 7.2.2. mpi is enabled by adding -DPARALLEL to CFLAGS
-PATCHES=( "${FILESDIR}"/${P}-makefile.patch )
-
-src_configure() {
-	use cpu_flags_x86_sse3 && append-cppflags -D__SIM_SSE3
-	use threads && \
-		append-cppflags -D_USE_PTHREADS && \
-		append-libs -pthread
-
-	tc-export CC
-}
-
-src_compile() {
-	emake -f Makefile.gcc
-}
-
-src_install() {
-	dobin raxmlHPC
-}
-- 
cgit v1.2.3-65-gdbad