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| author |   Justin Lecher <jlec@gentoo.org> | 2013-02-17 11:10:32 +0000 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2013-02-17 11:10:32 +0000 |
| commit | 2771a4a03f15876439afd5d62280037634d6608f (patch) | |
| tree | e910f6673dacdf12909e3942dac6f9533906618a /sci-biology/sibsim4 | |
| parent | Remove old (diff) | |
| download | historical-2771a4a03f15876439afd5d62280037634d6608f.tar.gz historical-2771a4a03f15876439afd5d62280037634d6608f.tar.bz2 historical-2771a4a03f15876439afd5d62280037634d6608f.zip | |
sci-biology/sibsim4: Respect CC, CFLAGS and LDFLAGS, #328431
Package-Manager: portage-2.2.0_alpha163/cvs/Linux x86_64
Manifest-Sign-Key: 0x8009D6F070EB7916
Diffstat (limited to 'sci-biology/sibsim4')
| -rw-r--r-- | sci-biology/sibsim4/ChangeLog | 8 | ||||
| -rw-r--r-- | sci-biology/sibsim4/Manifest | 22 | ||||
| -rw-r--r-- | sci-biology/sibsim4/metadata.xml | 10 | ||||
| -rw-r--r-- | sci-biology/sibsim4/sibsim4-0.20.ebuild | 16 |
4 files changed, 34 insertions, 22 deletions
diff --git a/sci-biology/sibsim4/ChangeLog b/sci-biology/sibsim4/ChangeLog index 82398f1f5bc2..30e8a2e7d78c 100644 --- a/sci-biology/sibsim4/ChangeLog +++ b/sci-biology/sibsim4/ChangeLog @@ -1,6 +1,10 @@ # ChangeLog for sci-biology/sibsim4 -# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/sibsim4/ChangeLog,v 1.4 2010/07/16 09:31:29 fauli Exp $ +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/sibsim4/ChangeLog,v 1.5 2013/02/17 11:10:27 jlec Exp $ + + 17 Feb 2013; Justin Lecher <jlec@gentoo.org> sibsim4-0.20.ebuild, + metadata.xml: + Respect CC, CFLAGS and LDFLAGS, #328431 16 Jul 2010; Christian Faulhammer <fauli@gentoo.org> sibsim4-0.20.ebuild: stable x86, bug 328431 diff --git a/sci-biology/sibsim4/Manifest b/sci-biology/sibsim4/Manifest index 20917d52c822..53efe84c1106 100644 --- a/sci-biology/sibsim4/Manifest +++ b/sci-biology/sibsim4/Manifest @@ -1,16 +1,16 @@ -----BEGIN PGP SIGNED MESSAGE----- -Hash: SHA1 +Hash: SHA512 -DIST SIBsim4-0.17.tar.gz 30822 RMD160 9ad3ede299212145f9c095a55c446558947a2396 SHA1 adec7e0872b6a5c93b493e320ee87be2e90dbb38 SHA256 f01d53cb07d946d1f488d97e157bfff858233a2f5ce960ba26a039ee246a3c6f -DIST SIBsim4-0.20.tar.gz 32118 RMD160 6f3d730660e9f57ace23468767dec00f00533d38 SHA1 cddb574d8403a1a4d38a39f74d7a7bd54cb0364b SHA256 ee02ae5f678d6843cf3ba267140dfccf9648a60d1f01263ae70d405723a35463 -EBUILD sibsim4-0.17.ebuild 650 RMD160 1fd29732dc28e178b8753302a2f6de1749dd5f87 SHA1 4330970afff1a801934eea5fc9302246fca6c74a SHA256 67d1459810f523ad4466bea367d87e2886f9aa69165478a21436e2e4a2347790 -EBUILD sibsim4-0.20.ebuild 648 RMD160 8ac6f3043df070570d83d179f19fcbebd41afd04 SHA1 a75f13a2648ae1f5d4755aa2fec963a23d226bd7 SHA256 4c1f442e2f7ca61dcb13ae437cabc25c093b133653e28d455eb7c2b1ddeb7494 -MISC ChangeLog 684 RMD160 0c60d93e5b1c3204d43b630ad51f2710b041a693 SHA1 1b21843789223937fa9eb25315cf8b5674621ec5 SHA256 458e0695528beffff02e0d3e9b04450adf7e5a6300d343aa6482c89c4b7346ba -MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 +DIST SIBsim4-0.17.tar.gz 30822 SHA256 f01d53cb07d946d1f488d97e157bfff858233a2f5ce960ba26a039ee246a3c6f +DIST SIBsim4-0.20.tar.gz 32118 SHA256 ee02ae5f678d6843cf3ba267140dfccf9648a60d1f01263ae70d405723a35463 SHA512 3802520095e83d3c691804b661696095a4198c4b2a16385c55ccdc8e4e836f82cc9c2251a5d37cb5918c2ee80aeb81737d751e6b065fbfe9c64f1aee3e0ea0c8 WHIRLPOOL b6117192170a7c8b6bcc441c8b31b392410116d25045203ce33e5274a0a65608de408626df5a29fddbbbe34973869b055603defd58d06cbc6240925556b63282 +EBUILD sibsim4-0.17.ebuild 650 SHA256 67d1459810f523ad4466bea367d87e2886f9aa69165478a21436e2e4a2347790 SHA512 e925a8b82bacf6524bd8bbc7dac93545baee7d77e663f07c9d3842913c9384c70449d236c821a21956de9e3d1fb4cc73d16b667f3fb1aa7274d6b871f8a3fc50 WHIRLPOOL 783ceeb0f45c0b6206010d51d61c83964f17b4484860bda2a84836ee34b4dcf90127742d4d6a5221dae6ee65eb37f1890ef4c331e185e4b1b8ac9f1aaf145cec +EBUILD sibsim4-0.20.ebuild 752 SHA256 daac83a1fc25c52f7a4fa56c1d4ef6da6ce640414131e8d1696682b3d17632c0 SHA512 d00d9fbcaed2e6f028f83e62ded5a0afb6b76a196373fce45e5a34f14749d400797217f3434b2dd77b7a4af91720485e7fcef42ce0f821ad0eb9ad845a5d80dd WHIRLPOOL 15816279cdcf08905565239d40b9b0952d6bd03492396e91f7988f8cf7934bea5405cdd67bbc9fb5faf0ed5e7d20ea44dc6d2cfdc2a496ad0cf1f2f22a715ecc +MISC ChangeLog 810 SHA256 fb5b7d459e872d011858ec24f9c9891363a3252365e77bcbfdb0d3368b480e12 SHA512 ee1f73d6819088c75e8ca364ebf3806cdef3b28499ee4419ed96de4f86f0f90cc8ba865e88f4e1206a1435eb40e15c601f5d06b0fcc8968a1f2bd98663430c57 WHIRLPOOL 15a0608ac50132963a4ffbb821448704c7eaa52a7d5d930d60735bb2ca643cba3d5a7601754f0833e39a2f0df60c5628b54d7baf34cdf6e28cdbb87a7ea65ac5 +MISC metadata.xml 266 SHA256 98c7d1da8a728a1f1d796a79d51f25e4164e24048ec1aacbbf0ae2ffb171ff35 SHA512 879cdcca092d4c82b8c63672c91e08e7b01e81419d2c7c7b766de96ba2a32dd1e21c18968ed7172eec8604f52c92b19a31773f428bce9461d9b8190384680194 WHIRLPOOL 0f46288ab7090ad3da5b31816792427e4ad1a950e39a503bb406ebe8789cffedd9c85b46bfbf040fffb8aad443f512c28716a0a6436d0c06309155277060cdcd -----BEGIN PGP SIGNATURE----- -Version: GnuPG v2.0.15 (GNU/Linux) +Version: GnuPG v2.0.19 (GNU/Linux) -iEYEARECAAYFAkxAJ2gACgkQNQqtfCuFneMHBwCdElH8DxATdE0urW61zOKXoXkH -A9UAn2u/32o0pWpd34QprXDtsZcOdqP8 -=szgi +iEYEAREKAAYFAlEguskACgkQgAnW8HDreRZrmACeJafnyd4gc7bhVkD9fbPnK6MA +vSQAoMUDZnIekCAIzuZrESaMJ8OUeTy+ +=ceya -----END PGP SIGNATURE----- diff --git a/sci-biology/sibsim4/metadata.xml b/sci-biology/sibsim4/metadata.xml index 3302123e5718..fc7c76942a10 100644 --- a/sci-biology/sibsim4/metadata.xml +++ b/sci-biology/sibsim4/metadata.xml @@ -1,9 +1,9 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> - <maintainer> - <email>weaver@gentoo.org</email> - <name>Andrey Kislyuk</name> - </maintainer> - <herd>sci-biology</herd> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/sibsim4/sibsim4-0.20.ebuild b/sci-biology/sibsim4/sibsim4-0.20.ebuild index c1bf1d68b4bd..b8d42bf631d5 100644 --- a/sci-biology/sibsim4/sibsim4-0.20.ebuild +++ b/sci-biology/sibsim4/sibsim4-0.20.ebuild @@ -1,8 +1,10 @@ -# Copyright 1999-2010 Gentoo Foundation +# Copyright 1999-2013 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/sibsim4/sibsim4-0.20.ebuild,v 1.2 2010/07/16 09:31:29 fauli Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/sibsim4/sibsim4-0.20.ebuild,v 1.3 2013/02/17 11:10:27 jlec Exp $ -EAPI="2" +EAPI=5 + +inherit toolchain-funcs DESCRIPTION="A rewrite and improvement upon sim4, a DNA-mRNA aligner" HOMEPAGE="http://sibsim4.sourceforge.net/" @@ -19,7 +21,13 @@ RDEPEND="" S="${WORKDIR}/SIBsim4-${PV}" src_prepare() { - sed -i 's/CFLAGS = \(.*\)/CFLAGS := \1 ${CFLAGS}/' "${S}/Makefile" + sed \ + -e 's/CFLAGS = /CFLAGS +=/' \ + -e '/^CC/s:=:?=:' \ + -e '/^OPT/d' \ + -e "s:-o:${LDFLAGS} -o:g" \ + -i "${S}/Makefile" || die + tc-export CC } src_install() { |