diff options
| author |   Andrey Kislyuk <weaver@gentoo.org> | 2010-01-21 18:25:31 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2010-01-21 18:25:31 +0000 |
| commit | 9f81649b85523d55fb5380e3d4a66ebecf00b3b4 (patch) | |
| tree | 6ca3c7140011be5036affff0de4f0b207f0b4bf4 /sci-biology | |
| parent | Add myself to maintainers. (diff) | |
| download | historical-9f81649b85523d55fb5380e3d4a66ebecf00b3b4.tar.gz historical-9f81649b85523d55fb5380e3d4a66ebecf00b3b4.tar.bz2 historical-9f81649b85523d55fb5380e3d4a66ebecf00b3b4.zip | |
New package, ebuild written by me
Package-Manager: portage-2.2_rc30/cvs/Linux x86_64
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/bfast/ChangeLog | 10 | ||||
| -rw-r--r-- | sci-biology/bfast/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/bfast/bfast-0.6.2a.ebuild | 39 | ||||
| -rw-r--r-- | sci-biology/bfast/metadata.xml | 9 |
4 files changed, 62 insertions, 0 deletions
diff --git a/sci-biology/bfast/ChangeLog b/sci-biology/bfast/ChangeLog new file mode 100644 index 000000000000..6633e6a83d5e --- /dev/null +++ b/sci-biology/bfast/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/bfast +# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bfast/ChangeLog,v 1.1 2010/01/21 18:25:31 weaver Exp $ + +*bfast-0.6.2a (21 Jan 2010) + + 21 Jan 2010; Andrey Kislyuk <weaver@gentoo.org> +metadata.xml, + +bfast-0.6.2a.ebuild: + New package, ebuild written by me + diff --git a/sci-biology/bfast/Manifest b/sci-biology/bfast/Manifest new file mode 100644 index 000000000000..5b82c058ce80 --- /dev/null +++ b/sci-biology/bfast/Manifest @@ -0,0 +1,4 @@ +DIST bfast-0.6.2a.tar.gz 2453822 RMD160 5efdb29b91500bbfd86618780c9f98ecb87e1934 SHA1 d80d0b57c7584c7c080e9d963eac2d210343626c SHA256 083b2fa641f701e0f3a7d54bf36a89b94b02e4f7bd046a6d860c1dd72447d6dd +EBUILD bfast-0.6.2a.ebuild 974 RMD160 401a61be457de01e61b7398451d6a5e992b9c323 SHA1 4e670faeda2e5c2abbbf17ca7f12f1ab4cebcb8e SHA256 435e5f2dd465847bf1365479939b3575e0e590c91ec4ee947657d829c3a3bde9 +MISC ChangeLog 362 RMD160 04ec02086ac09696e1e621fca0812ef8b19b245c SHA1 19feb96317db3932cdfec08e95a2b055d9816498 SHA256 ff433c5cc17dc22fd1d435261c9156f0588b888d87beaa064ab0f4ac519c8617 +MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 diff --git a/sci-biology/bfast/bfast-0.6.2a.ebuild b/sci-biology/bfast/bfast-0.6.2a.ebuild new file mode 100644 index 000000000000..61b317c3442c --- /dev/null +++ b/sci-biology/bfast/bfast-0.6.2a.ebuild @@ -0,0 +1,39 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bfast/bfast-0.6.2a.ebuild,v 1.1 2010/01/21 18:25:31 weaver Exp $ + +EAPI="2" + +inherit autotools + +DESCRIPTION="Blat-like Fast Accurate Search Tool" +HOMEPAGE="http://genome.ucla.edu/bfast" +SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86" + +DEPEND="" +RDEPEND="dev-perl/XML-Simple" + +src_prepare() { + sed -i -e 's/-m64//' \ + -e 's/CFLAGS="${default_CFLAGS} ${extended_CFLAGS}"/CFLAGS="${CFLAGS} ${default_CFLAGS} ${extended_CFLAGS}"/' \ + configure.ac || die + eautoreconf +} + +src_install() { + einstall || die + dodoc AUTHORS NEWS README +} + +src_test() { + # not sure why this is necessary + sed -i 's|test.definitions.sh|./test.definitions.sh|' tests/*.sh + # problems with checksum matching - also not sure why + sed -i '/test.diff.sh/ d' tests/Makefile + emake check || die +} diff --git a/sci-biology/bfast/metadata.xml b/sci-biology/bfast/metadata.xml new file mode 100644 index 000000000000..3302123e5718 --- /dev/null +++ b/sci-biology/bfast/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <herd>sci-biology</herd> +</pkgmetadata> |