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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2010-02-03 03:06:22 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2010-02-03 03:06:22 +0000 |
| commit | d3e2074a58c9b0e098558e7754ff8ff545144dab (patch) | |
| tree | 3b784a9a33ab6af87169d2a8aeb4fd01f2b6dd17 /sci-biology | |
| parent | Version bump (diff) | |
| download | historical-d3e2074a58c9b0e098558e7754ff8ff545144dab.tar.gz historical-d3e2074a58c9b0e098558e7754ff8ff545144dab.tar.bz2 historical-d3e2074a58c9b0e098558e7754ff8ff545144dab.zip | |
New package, ebuild written by me
Package-Manager: portage-2.2_rc30/cvs/Linux x86_64
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/mira/ChangeLog | 10 | ||||
| -rw-r--r-- | sci-biology/mira/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/mira/metadata.xml | 9 | ||||
| -rw-r--r-- | sci-biology/mira/mira-3.0.0.ebuild | 38 |
4 files changed, 61 insertions, 0 deletions
diff --git a/sci-biology/mira/ChangeLog b/sci-biology/mira/ChangeLog new file mode 100644 index 000000000000..445b304ddf32 --- /dev/null +++ b/sci-biology/mira/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/mira +# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/ChangeLog,v 1.1 2010/02/03 03:06:22 weaver Exp $ + +*mira-3.0.0 (02 Feb 2010) + + 02 Feb 2010; Andrey Kislyuk <weaver@gentoo.org> +metadata.xml, + +mira-3.0.0.ebuild: + New package, ebuild written by me + diff --git a/sci-biology/mira/Manifest b/sci-biology/mira/Manifest new file mode 100644 index 000000000000..da8ec0160969 --- /dev/null +++ b/sci-biology/mira/Manifest @@ -0,0 +1,4 @@ +DIST mira-3.0.0.tar.bz2 7323621 RMD160 ab95d728a74b101ff49bea80bc5648fa9ebb69b8 SHA1 d736b324115d24270602cdc7066feb928869a916 SHA256 564177fb9777ecdf657640f8e7ea5d7aa0e76b35cebb882ccf77e1714d2fe21d +EBUILD mira-3.0.0.ebuild 1034 RMD160 8c51f19e0290893aa9e04d76b050f9ed74a9ec12 SHA1 cab3d220d2fd86a5d3a8c2213089282b8f4da5d2 SHA256 be47c1cfd7121ec1551512182938e879398989e598a4994223050cfd82b1e10d +MISC ChangeLog 356 RMD160 dcae4d2fb03db9c8eaffad435c51e83ef7ce0b18 SHA1 97af4fb3b1457cc147314b0c7b9a2b173ec575b0 SHA256 d2b0e1e4e0d3d70a5102d98d5411cd73ee890d9155a0f465129126f9ac3339f5 +MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 diff --git a/sci-biology/mira/metadata.xml b/sci-biology/mira/metadata.xml new file mode 100644 index 000000000000..3302123e5718 --- /dev/null +++ b/sci-biology/mira/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <herd>sci-biology</herd> +</pkgmetadata> diff --git a/sci-biology/mira/mira-3.0.0.ebuild b/sci-biology/mira/mira-3.0.0.ebuild new file mode 100644 index 000000000000..3543b9d68d38 --- /dev/null +++ b/sci-biology/mira/mira-3.0.0.ebuild @@ -0,0 +1,38 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/mira-3.0.0.ebuild,v 1.1 2010/02/03 03:06:22 weaver Exp $ + +EAPI="2" + +inherit base + +DESCRIPTION="Whole Genome Shotgun and EST Sequence Assembler for Sanger, 454 and Solexa / Illumina" +HOMEPAGE="http://www.chevreux.org/projects_mira.html" +SRC_URI="mirror://sourceforge/mira-assembler/${P}.tar.bz2" + +LICENSE="GPL-2" +SLOT="0" +IUSE="doc" +KEYWORDS="~amd64 ~x86" + +CDEPEND=">=dev-libs/boost-1.35.0" +DEPEND="${CDEPEND} + dev-libs/expat + doc? ( >=app-text/texlive-core-2009 )" +RDEPEND="${CDEPEND}" + +src_prepare() { + find -name configure -or -name 'Makefile*' | xargs sed -i 's/flex++/flex -+/' || die +} + +src_compile() { + base_src_compile + if use doc; then emake -C doc clean docs || die; fi +} + +src_install() { + einstall || die + dodoc AUTHORS GETTING_STARTED NEWS README* HELP_WANTED THANKS INSTALL + find doc/docs/man -type f | xargs doman + find doc/docs/texinfo -type f | xargs doinfo +} |