Added old version for multiprocessor environements

Package-Manager: portage-2.0.54

4 files changed, 76 insertions, 2 deletions

diff --git a/sci-biology/wise/ChangeLog b/sci-biology/wise/ChangeLog
index 93fa8c050ecd..5defdb19eee2 100644
--- a/sci-biology/wise/ChangeLog
+++ b/sci-biology/wise/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/wise
 # Copyright 1999-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/wise/ChangeLog,v 1.4 2006/01/21 18:40:12 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/wise/ChangeLog,v 1.5 2006/02/19 03:01:32 ribosome Exp $
+
+*wise-2.1.23c (19 Feb 2006)
+
+  19 Feb 2006; Olivier Fisette <ribosome@gentoo.org> +wise-2.1.23c.ebuild:
+  Added old version for multiprocessor environements, as suggested by dawe
+  <daweonline@gmail.com> in bug #122338.
 
   21 Jan 2006; Olivier Fisette <ribosome@gentoo.org> wise-2.2.0.ebuild:
   Ebuild clean-up.
diff --git a/sci-biology/wise/Manifest b/sci-biology/wise/Manifest
index 5d591784b0d1..2cf38fbbeb1c 100644
--- a/sci-biology/wise/Manifest
+++ b/sci-biology/wise/Manifest
@@ -1,6 +1,8 @@
-MD5 11e51701fd6d1b176d13b774f4df7005 ChangeLog 658
+MD5 3bf52daf842a400e4e70a0ebc967b395 ChangeLog 879
+MD5 ecb140907c2def41cb150412463da2c3 files/digest-wise-2.1.23c 64
 MD5 dfe3a28949733a00d7126ed491e8b3f2 files/digest-wise-2.2.0 62
 MD5 6c1b047599122f062a65ad125739936b files/wise-api.tex.patch 2234
 MD5 7321fc88d375cef4db1411e6e6c867ab files/wise-env 40
 MD5 f189a3c4ff5ae55bcee4f8ed0ace5d20 metadata.xml 254
+MD5 941a4f8bde488eb8c26a9dc20567a2de wise-2.1.23c.ebuild 1504
 MD5 26b2b5a3d7d88edd8990896ad8050cb1 wise-2.2.0.ebuild 1686
diff --git a/sci-biology/wise/files/digest-wise-2.1.23c b/sci-biology/wise/files/digest-wise-2.1.23c
new file mode 100644
index 000000000000..9f6fecfd4822
--- /dev/null
+++ b/sci-biology/wise/files/digest-wise-2.1.23c
@@ -0,0 +1 @@
+MD5 c058f9c3f4d5621caf581bb736f7b1f1 wise2.1.23c.tar.gz 2099297
diff --git a/sci-biology/wise/wise-2.1.23c.ebuild b/sci-biology/wise/wise-2.1.23c.ebuild
new file mode 100644
index 000000000000..6297ac6617b6
--- /dev/null
+++ b/sci-biology/wise/wise-2.1.23c.ebuild
@@ -0,0 +1,65 @@
+# Copyright 1999-2006 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/wise/wise-2.1.23c.ebuild,v 1.1 2006/02/19 03:01:32 ribosome Exp $
+
+inherit eutils toolchain-funcs flag-o-matic
+
+DESCRIPTION="Intelligent algorithms for DNA searches"
+LICENSE="BSD"
+HOMEPAGE="http://www.ebi.ac.uk/Wise2/"
+SRC_URI="ftp://ftp.ebi.ac.uk/pub/software/unix/${PN}2/${PN}${PV}.tar.gz"
+
+SLOT="0"
+IUSE="threads"
+KEYWORDS="~sparc ~x86"
+
+RDEPEND="=sci-biology/hmmer-2.3.2-r1"
+
+DEPEND="${RDEPEND}
+	app-shells/tcsh
+	dev-lang/perl
+	virtual/tetex"
+
+S="${WORKDIR}/${PN}${PV}"
+
+src_unpack() {
+	unpack ${A}
+	cd "${S}"
+	if use threads; then
+		append-flags "-DPTHREAD"
+		sed -e "s/#EXTRALIBS = -lpthread/EXTRALIBS = -lpthread/"  -i makefile || die
+	fi
+	sed -e "s/CC = cc/CC = $(tc-getCC)/" \
+		-e "s/CFLAGS = -c -O/CFLAGS = -c ${CFLAGS}/" \
+		-i makefile || die
+	cd "${S}"/docs
+}
+
+src_compile() {
+	cd src
+	make all || die
+	cd "${S}"/docs
+	for i in appendix dynamite wise2 wise3arch; do
+		latex ${i} || die
+		latex ${i} || die
+		dvips ${i}.dvi -o || die
+	done
+}
+
+src_install() {
+	dobin "${S}"/bin/*
+	dolib "${S}"/base/libwisebase.a
+	dolib "${S}"/dynlibsrc/libdyna.a
+	dobin "${S}"/dynlibsrc/testgendb
+	dolib "${S}"/models/libmodel.a
+	insinto /usr/share/${PN}
+	doins -r "${S}"/wisecfg
+	insinto /usr/share/doc/${PF}
+	doins "${S}"/docs/*.ps
+	newenvd "${FILESDIR}"/${PN}-env 24wise
+}
+
+src_test() {
+	cd "${S}"/src
+	WISECONFIGDIR="${S}/wisecfg" make test || die
+}