diff options
Diffstat (limited to 'sci-biology/mothur')
| -rw-r--r-- | sci-biology/mothur/ChangeLog | 13 | ||||
| -rw-r--r-- | sci-biology/mothur/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/mothur/metadata.xml | 9 | ||||
| -rw-r--r-- | sci-biology/mothur/mothur-1.4.1.ebuild | 30 |
4 files changed, 56 insertions, 0 deletions
diff --git a/sci-biology/mothur/ChangeLog b/sci-biology/mothur/ChangeLog new file mode 100644 index 000000000000..c46004cbeb63 --- /dev/null +++ b/sci-biology/mothur/ChangeLog @@ -0,0 +1,13 @@ +# ChangeLog for sci-biology/mothur +# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/mothur/ChangeLog,v 1.1 2009/07/07 18:09:18 weaver Exp $ + +*mothur-1.4.1 (07 Jul 2009) + + 07 Jul 2009; Andrey Kislyuk <weaver@gentoo.org> +metadata.xml, + +mothur-1.4.1.ebuild: + Import from Science overlay + + 04 Mar 2009; Andrey Kislyuk <weaver@gentoo.org> ChangeLog: + New package, ebuild written by me + diff --git a/sci-biology/mothur/Manifest b/sci-biology/mothur/Manifest new file mode 100644 index 000000000000..0b595ba535dd --- /dev/null +++ b/sci-biology/mothur/Manifest @@ -0,0 +1,4 @@ +DIST mothur-1.4.1.zip 401879 RMD160 fd78a9257fb075434ed6fa38b4df0847e978e274 SHA1 88b06fbd985f91822b42ecb9182bd340630c2429 SHA256 b5302d3f33f433d1991d822203cf9f0f1112c7dccd9663d9185402ec9eadd38d +EBUILD mothur-1.4.1.ebuild 710 RMD160 53b4a8f74563dda9dd30705915eb87f2ce57266b SHA1 134dd33d0cbb9ae62249058a6dac711debae9e1c SHA256 3df7e3727bf0ad9df5e80c60ce75869bfedd4e641271e40487d59cf169936791 +MISC ChangeLog 456 RMD160 aa2cd2f9482d489ed2f4f24f07d83b16d07dbb35 SHA1 01b7813f3c16f799ee82e574e6591e5e6c8dd2f7 SHA256 298f47fa4d2e8f5e2021b202b40cb1237f21ccfc714536697525dd04735370c9 +MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 diff --git a/sci-biology/mothur/metadata.xml b/sci-biology/mothur/metadata.xml new file mode 100644 index 000000000000..3302123e5718 --- /dev/null +++ b/sci-biology/mothur/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <herd>sci-biology</herd> +</pkgmetadata> diff --git a/sci-biology/mothur/mothur-1.4.1.ebuild b/sci-biology/mothur/mothur-1.4.1.ebuild new file mode 100644 index 000000000000..d5ca31c44ab7 --- /dev/null +++ b/sci-biology/mothur/mothur-1.4.1.ebuild @@ -0,0 +1,30 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/mothur/mothur-1.4.1.ebuild,v 1.1 2009/07/07 18:09:18 weaver Exp $ + +EAPI="2" + +inherit toolchain-funcs + +DESCRIPTION="A suite of algorithms for ecological bioinformatics" +HOMEPAGE="http://schloss.micro.umass.edu/mothur/Main_Page" +SRC_URI="mirror://gentoo/${P}.zip" + +LICENSE="GPL-3" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86" + +DEPEND="app-arch/unzip" +RDEPEND="" + +#S="${WORKDIR}/${PN}" + +src_prepare() { + sed -i -e 's/CC_OPTIONS =/CC_OPTIONS = ${CXXFLAGS} /' \ + -e 's|CC = g++|CC = '$(tc-getCXX)'|' "${S}/makefile" || die +} + +src_install() { + dobin mothur || die +} |