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* sci-biology/rebase: Version BumpJustin Lecher2013-10-083-7/+70
| | | | | Package-Manager: portage-2.2.7/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* flower version bumpHeather Cynede2013-09-223-12/+41
| | | | Package-Manager: portage-2.2.6/cvs/Linux x86_64
* sci-biology/samtools: Version BUmp, #485450Justin Lecher2013-09-204-6/+269
| | | | | Package-Manager: portage-2.2.6/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/bowtie: Fix location of html files, #484620Justin Lecher2013-09-183-19/+22
| | | | | Package-Manager: portage-2.2.6/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/biopython: Version BumpJustin Lecher2013-09-173-6/+69
| | | | | Package-Manager: portage-2.2.6/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/bamtools: Version Bump, drop old, #482636; thanks Martin ↵Justin Lecher2013-09-174-11/+51
| | | | | | | Mokrejš for the patch Package-Manager: portage-2.2.6/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* NMU: Fix whitespace.Manuel Rüger2013-09-143-5/+8
| | | | Package-Manager: portage-2.2.4/cvs/Linux x86_64
* NMU: Version bump. Migrate to ruby-ng eclass. Cleanup old. See bug #475310.Manuel Rüger2013-09-147-98/+71
| | | | Package-Manager: portage-2.2.4/cvs/Linux x86_64
* Analyze 454 flowgrams (.SFF files) (requested by Martin MOKREJŠ).Sergei Trofimovich2013-09-123-1/+70
| | | | | Package-Manager: portage-2.2.1_p20/cvs/Linux x86_64 Manifest-Sign-Key: 0x611FF3AA
* Analyze 454 flowgrams (.SFF files) (requested by Martin MOKREJŠ).Sergei Trofimovich2013-09-122-0/+12
| | | | | Package-Manager: portage-2.2.1_p20/cvs/Linux x86_64 Manifest-Sign-Key: 0x611FF3AA
* Clean up PYTHON_COMPAT from old implementations.Michał Górny2013-09-056-21/+50
| | | | | Package-Manager: portage-2.2.1/cvs/Linux x86_64 Manifest-Sign-Key: 0xEFB4464E!
* Update e-mail address.Jeroen Roovers2013-08-273-20/+11
| | | | | Package-Manager: portage-2.2.1/cvs/Linux x86_64 Manifest-Sign-Key: 0xA792A613
* sci-biology/abyss: Version BUmp, respect AR, #477580Justin Lecher2013-08-118-22/+139
| | | | | Package-Manager: portage-2.2.0_alpha196/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/last: Drop oldJustin Lecher2013-08-116-165/+19
| | | | | Package-Manager: portage-2.2.0_alpha196/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/maqview: Drop oldJustin Lecher2013-08-114-79/+19
| | | | | Package-Manager: portage-2.2.0_alpha196/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/bowtie: Drop oldJustin Lecher2013-08-115-129/+19
| | | | | Package-Manager: portage-2.2.0_alpha196/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/abyss: Drop oldJustin Lecher2013-08-115-122/+19
| | | | | Package-Manager: portage-2.2.0_alpha196/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Stable for x86, wrt bug #477140Agostino Sarubbo2013-08-073-14/+22
| | | | | | Package-Manager: portage-2.1.12.2/cvs/Linux ppc64 RepoMan-Options: --include-arches="x86" Manifest-Sign-Key: 0x7194459F
* Stable for amd64 wrt bug #477140José María Alonso2013-07-283-20/+17
| | | | | Package-Manager: portage-2.1.12.2/cvs/Linux x86_64 Manifest-Sign-Key: 0xD628E536
* Stable for x86, wrt bug #477144Agostino Sarubbo2013-07-273-18/+21
| | | | | | Package-Manager: portage-2.1.12.13/cvs/Linux x86_64 RepoMan-Options: --include-arches="x86" Manifest-Sign-Key: 0x7194459F
* Stable for x86, wrt bug #477134Agostino Sarubbo2013-07-273-18/+21
| | | | | | Package-Manager: portage-2.1.12.13/cvs/Linux x86_64 RepoMan-Options: --include-arches="x86" Manifest-Sign-Key: 0x7194459F
* Stable for x86, wrt bug #477186Agostino Sarubbo2013-07-273-18/+21
| | | | | | Package-Manager: portage-2.1.12.13/cvs/Linux x86_64 RepoMan-Options: --include-arches="x86" Manifest-Sign-Key: 0x7194459F
* Stable for amd64, wrt bug #477144Agostino Sarubbo2013-07-213-21/+23
| | | | | | Package-Manager: portage-2.1.12.13/cvs/Linux x86_64 RepoMan-Options: --include-arches="amd64" Manifest-Sign-Key: 0x7194459F
* Stable for amd64, wrt bug #477134Agostino Sarubbo2013-07-213-20/+22
| | | | | | Package-Manager: portage-2.1.12.13/cvs/Linux x86_64 RepoMan-Options: --include-arches="amd64" Manifest-Sign-Key: 0x7194459F
* Stable for amd64, wrt bug #477186Agostino Sarubbo2013-07-213-11/+23
| | | | | | Package-Manager: portage-2.1.12.13/cvs/Linux x86_64 RepoMan-Options: --include-arches="amd64" Manifest-Sign-Key: 0x7194459F
* sci-biology/mafft: Keyword for ~-linuxJustin Lecher2013-07-193-8/+21
| | | | | Package-Manager: portage-2.2.0_alpha188/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/allpathslg: Version BumpJustin Lecher2013-07-174-10/+64
| | | | | Package-Manager: portage-2.2.0_alpha188/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/last: Version BumpJustin Lecher2013-07-173-8/+75
| | | | | Package-Manager: portage-2.2.0_alpha188/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/abyss: Moved to autotools-utils.eclassJustin Lecher2013-07-173-17/+35
| | | | | Package-Manager: portage-2.2.0_alpha188/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/seqan: Add missing depJustin Lecher2013-07-173-8/+22
| | | | | Package-Manager: portage-2.2.0_alpha188/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/bowtie: Version BumpJustin Lecher2013-07-173-8/+67
| | | | | Package-Manager: portage-2.2.0_alpha188/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/allpaths: Bump to EAPI=5Justin Lecher2013-07-173-13/+26
| | | | | Package-Manager: portage-2.2.0_alpha188/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/mira: Version BUmp; fixed compilation with dev-libs/boost-1.53.0 ↵Justin Lecher2013-07-073-12/+81
| | | | | | | and some libtool versions, #450322; thanks Martin Mokrejs for all his work Package-Manager: portage-2.2.0_alpha186/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/mafft: Drop old; Bump versionJustin Lecher2013-07-0311-434/+16
| | | | | Package-Manager: portage-2.2.0_alpha186/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/biopython: Fix deps for pythonJustin Lecher2013-07-023-14/+13
| | | | | Package-Manager: portage-2.2.0_alpha186/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/mafft: Version BumpJustin Lecher2013-06-243-5/+73
| | | | | Package-Manager: portage-2.2.0_alpha184/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* herd is now sci-biologySebastien Fabbro2013-06-196-28/+31
| | | | | Package-Manager: portage-2.2.01.22013-prefix/cvs/Linux x86_64 Manifest-Sign-Key: 0x13CB1360
* sci-biology/sibsim4: Drop maintainerJustin Lecher2013-06-183-12/+11
| | | | | Package-Manager: portage-2.2.0_alpha180/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/mafft: version BumpJustin Lecher2013-06-123-5/+73
| | | | | Package-Manager: portage-2.2.0_alpha179/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/ncbi-tools: Fix for prefixJustin Lecher2013-06-124-12/+17
| | | | | Package-Manager: portage-2.2.0_alpha179/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/biopython: Keyword ~-linuxJustin Lecher2013-06-063-9/+12
| | | | | Package-Manager: portage-2.2.0_alpha177/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/mafft: Update to new upstream tarballJustin Lecher2013-06-062-8/+11
| | | | | Package-Manager: portage-2.2.0_alpha177/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/mafft: Version BumpJustin Lecher2013-06-063-5/+73
| | | | | Package-Manager: portage-2.2.0_alpha177/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/vaal: Version BUmpJustin Lecher2013-06-023-7/+56
| | | | | Package-Manager: portage-2.2.0_alpha177/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/shrimp: Fix usage of new python r1 eclasses (missing ↵Justin Lecher2013-05-293-10/+17
| | | | | | | PYTHON_REQUIRED_USE, PYTHON_DEPS) Package-Manager: portage-2.2.0_alpha177/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/vienna-rna: Fix usage of new python r1 eclasses (missing ↵Justin Lecher2013-05-293-8/+13
| | | | | | | PYTHON_REQUIRED_USE) Package-Manager: portage-2.2.0_alpha177/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/seqan: Fix usage of new python r1 eclasses (missing ↵Justin Lecher2013-05-293-9/+15
| | | | | | | PYTHON_REQUIRED_USE, PYTHON_DEPS) Package-Manager: portage-2.2.0_alpha177/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/mafft: Use append-cppflags for preprocessor flagsJustin Lecher2013-05-263-8/+11
| | | | | Package-Manager: portage-2.2.0_alpha177/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/mafft: Version Bump, add test functionJustin Lecher2013-05-264-7/+93
| | | | | Package-Manager: portage-2.2.0_alpha177/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/mafft: Version BUmp, drop unnecessary dieJustin Lecher2013-05-214-13/+64
| | | | | Package-Manager: portage-2.2.0_alpha176/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916