Get Gentoo!
gentoo.org sites
gentoo.org Wiki Bugs Forums Packages
Planet Archives Sources
Infra Status
summaryrefslogtreecommitdiff
path: root/sci-biology
Commit message (Collapse)AuthorAgeFilesLines
* sci-biology/psipred: Version BumpJustin Lecher2014-04-073-16/+81
| | | | | Package-Manager: portage-2.2.10/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* New e-mail address.Jeroen Roovers2014-03-243-21/+12
| | | | | Package-Manager: portage-2.2.9-r1/cvs/Linux x86_64 Manifest-Sign-Key: 0xA792A613
* sci-biology/samtools: Fix symlink creation, thanks Martin Mokrejs telling me ↵Justin Lecher2014-03-233-15/+11
| | | | | | | that Package-Manager: portage-2.2.8-r1/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/rebase: Version BumpJustin Lecher2014-03-063-3/+78
| | | | | Package-Manager: portage-2.2.8-r1/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/tophat: Version Bump, #502532; thanks José María Fernández ↵Justin Lecher2014-03-064-8/+185
| | | | | | | González for the new ebuild Package-Manager: portage-2.2.8-r1/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Reference correct library name on Darwin, thanks Linlin Yan in bug #491812Fabian Groffen2014-02-113-24/+16
| | | | | Package-Manager: portage-2.2.8-prefix/cvs/SunOS i386 Manifest-Sign-Key: 0x5F75F607C5C74E89
* Version bump of sci-biology/readseqJohann Schmitz2014-02-083-9/+54
| | | | | Package-Manager: portage-2.2.7/cvs/Linux x86_64 Manifest-Sign-Key: 0x77C501ED
* Dropped unneeded patch files and dropped unneeded dependencies (bug #500488 ↵Johann Schmitz2014-02-088-340/+47
| | | | | | | and #239161) Package-Manager: portage-2.2.7/cvs/Linux x86_64 Manifest-Sign-Key: 0x77C501ED
* Revision bump: EAPI 5, add subslot to Boost dependency, fix compatibility ↵Sergey Popov2014-02-054-20/+33
| | | | | | | with Automake 1.14, wrt bug #499046. Drop old revision Package-Manager: portage-2.2.8/cvs/Linux x86_64 Manifest-Sign-Key: 0x1F357D42
* Revision bump: EAPI 5, add subslot to Boost dependency, fix underlinking on ↵Sergey Popov2014-02-053-7/+54
| | | | | | | Boost components, wrt bug #499038 Package-Manager: portage-2.2.8/cvs/Linux x86_64 Manifest-Sign-Key: 0x1F357D42
* Version BUmpJustin Lecher2014-01-303-16/+70
| | | | | Package-Manager: portage-2.2.8-r1/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/clustalw: Drop oldJustin Lecher2014-01-273-53/+19
| | | | | Package-Manager: portage-2.2.8-r1/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Stable for sparc, wrt bug #497214Agostino Sarubbo2014-01-263-18/+21
| | | | | | Package-Manager: portage-2.2.7/cvs/Linux x86_64 RepoMan-Options: --include-arches="sparc" Manifest-Sign-Key: 0x7194459F
* Stable for ppc64, wrt bug #497214Agostino Sarubbo2014-01-193-18/+21
| | | | | | Package-Manager: portage-2.2.7/cvs/Linux x86_64 RepoMan-Options: --include-arches="ppc64" Manifest-Sign-Key: 0x7194459F
* Stable for alpha, wrt bug #497214Agostino Sarubbo2014-01-183-18/+21
| | | | | | Package-Manager: portage-2.2.7/cvs/Linux x86_64 RepoMan-Options: --include-arches="alpha" Manifest-Sign-Key: 0x7194459F
* Spelling.Jeroen Roovers2014-01-173-12/+14
| | | | | Package-Manager: portage-2.2.8/cvs/Linux x86_64 Manifest-Sign-Key: 0xA792A613
* sci-biology/seaview: Drop oldJustin Lecher2014-01-143-94/+19
| | | | | Package-Manager: portage-2.2.8/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Stable for ppc, wrt bug #497216Agostino Sarubbo2014-01-146-29/+45
| | | | | | Package-Manager: portage-2.2.7/cvs/Linux x86_64 RepoMan-Options: --include-arches="ppc" Manifest-Sign-Key: 0x7194459F
* Stable for ppc, wrt bug #497214Agostino Sarubbo2014-01-143-18/+21
| | | | | | Package-Manager: portage-2.2.7/cvs/Linux x86_64 RepoMan-Options: --include-arches="ppc" Manifest-Sign-Key: 0x7194459F
* sci-biology/mira: Drop oldJustin Lecher2014-01-143-79/+19
| | | | | Package-Manager: portage-2.2.8/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Stable for x86, wrt bug #497214Agostino Sarubbo2014-01-143-8/+21
| | | | | | Package-Manager: portage-2.2.7/cvs/Linux x86_64 RepoMan-Options: --include-arches="x86" Manifest-Sign-Key: 0x7194459F
* Stable for x86, wrt bug #497218Agostino Sarubbo2014-01-143-8/+21
| | | | | | Package-Manager: portage-2.2.7/cvs/Linux x86_64 RepoMan-Options: --include-arches="x86" Manifest-Sign-Key: 0x7194459F
* Stable for x86, wrt bug #497216Agostino Sarubbo2014-01-143-8/+21
| | | | | | Package-Manager: portage-2.2.7/cvs/Linux x86_64 RepoMan-Options: --include-arches="x86" Manifest-Sign-Key: 0x7194459F
* amd64 stable, bug #497218Pacho Ramos2014-01-123-21/+13
| | | | | | Package-Manager: portage-2.2.8/cvs/Linux x86_64 RepoMan-Options: --include-arches="amd64" Manifest-Sign-Key: 0xA188FBD4
* amd64 stable, bug #497214Pacho Ramos2014-01-123-19/+12
| | | | | | Package-Manager: portage-2.2.8/cvs/Linux x86_64 RepoMan-Options: --include-arches="amd64" Manifest-Sign-Key: 0xA188FBD4
* amd64 stable, bug #497216Pacho Ramos2014-01-123-19/+12
| | | | | | Package-Manager: portage-2.2.8/cvs/Linux x86_64 RepoMan-Options: --include-arches="amd64" Manifest-Sign-Key: 0xA188FBD4
* sci-biology/vienna-rna: Punt base.eclassJustin Lecher2014-01-063-24/+25
| | | | | Package-Manager: portage-2.2.8/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/seaview: Punt base.eclassJustin Lecher2014-01-063-21/+23
| | | | | Package-Manager: portage-2.2.8/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/mira: Punt base.eclassJustin Lecher2014-01-063-20/+24
| | | | | Package-Manager: portage-2.2.8/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/clustal-omega: Version BumpJustin Lecher2014-01-063-7/+62
| | | | | Package-Manager: portage-2.2.8/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/mira: Drop oldJustin Lecher2014-01-064-128/+27
| | | | | Package-Manager: portage-2.2.8/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/seaview: Punt base.eclass; Bump EAPI to 5; add missing dep for ↵Justin Lecher2014-01-063-21/+35
| | | | | | | pkg-config; Give some PREFIX love; use tc-getPKG_CONFIG instead of plain pkg-config Package-Manager: portage-2.2.8/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/clustalw: Readd SLOT=1 ebuild; punt base.eclass usage; bump to ↵Justin Lecher2014-01-064-15/+94
| | | | | | | | EAPI=5 Package-Manager: portage-2.2.8/cvs/Linux x86_64 RepoMan-Options: --force Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/clustalx: Make sure only system libs are usedJustin Lecher2014-01-063-9/+68
| | | | | Package-Manager: portage-2.2.8/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/clustalw: Drop old and clean base.eclass usageJustin Lecher2014-01-066-124/+23
| | | | | Package-Manager: portage-2.2.8/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/biopython: Add additional patch from Martin MokrejšJustin Lecher2013-12-294-16/+108
| | | | | Package-Manager: portage-2.2.7/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/amos: Fix python supportJustin Lecher2013-12-294-6/+86
| | | | | Package-Manager: portage-2.2.7/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/velvet: Import Version BUmp from sci overlay, thanks mahn for ↵Justin Lecher2013-12-283-8/+98
| | | | | | | the ebuild, #495094 Package-Manager: portage-2.2.7/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/fasttree: Version BUmp, #494662Justin Lecher2013-12-205-9/+112
| | | | | Package-Manager: portage-2.2.7/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Cleanup old.Manuel Rüger2013-12-154-86/+6
| | | | Package-Manager: portage-2.2.7/cvs/Linux x86_64
* Stable for amd64, wrt bug #488414Agostino Sarubbo2013-12-153-19/+22
| | | | | | Package-Manager: portage-2.2.1/cvs/Linux x86_64 RepoMan-Options: --include-arches="amd64" Manifest-Sign-Key: 0x7194459F
* x86 stable, bug #488414Johannes Huber2013-12-073-5/+28
| | | | | Package-Manager: portage-2.2.7/cvs/Linux x86_64 Manifest-Sign-Key: 0xF3CFD2BD
* sci-biology/samtools: Fix underlinkingJustin Lecher2013-12-064-19/+25
| | | | | Package-Manager: portage-2.2.7/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/samtools: Keyword for *-linux, tested by meJustin Lecher2013-12-067-33/+38
| | | | | Package-Manager: portage-2.2.7/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/rebase: Version BumpJustin Lecher2013-12-013-22/+55
| | | | | Package-Manager: portage-2.2.7/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* NMU: Add missing dependency on libxml and ruby20 support. Fix tests see bug ↵Manuel Rüger2013-11-255-15/+83
| | | | | | #489712 Package-Manager: portage-2.2.7/cvs/Linux x86_64
* Dropped versions 1.58 and 1.63 as they don't meet the qa requirements and a ↵Johann Schmitz2013-11-244-87/+14
| | | | | | | snapshotted version of the lastest version is in the tree (#491816). Package-Manager: portage-2.2.7/cvs/Linux x86_64 Manifest-Sign-Key: 0x77C501ED
* Version bump and reworked ebuild for sci-biology/picard. Uses a snapshotted ↵Johann Schmitz2013-11-245-9/+228
| | | | | | | tarball from upstreams 1.103 subversion tag to meet gentoo qa requirements (wrt #491816) Package-Manager: portage-2.2.7/cvs/Linux x86_64 Manifest-Sign-Key: 0x77C501ED
* superseeded by sci-biology/allpathslgJustin Lecher2013-11-2011-960/+0
| | | | Upstream wants anybody to move over
* Removing x86 keyword as dependency sci-biology/vaal does not work on x86Patrick Lauer2013-11-134-28/+12
| | | | Package-Manager: portage-2.2.7/cvs/Linux x86_64