From 09119f9e3380e5f945e149fa14b86c98be77f874 Mon Sep 17 00:00:00 2001 From: Olivier Fisette Date: Wed, 18 Jul 2007 01:40:24 +0000 Subject: New upstream packaging for EMBOSS 5.0.0. Package-Manager: portage-2.1.2.9 --- sci-biology/embassy-domsearch/ChangeLog | 8 +++++++- .../embassy-domsearch-0.1.0-r2.ebuild | 13 +++++++++++++ .../files/digest-embassy-domsearch-0.1.0-r2 | 6 ++++++ sci-biology/embassy-esim4/ChangeLog | 8 +++++++- .../embassy-esim4/embassy-esim4-1.0.0-r4.ebuild | 13 +++++++++++++ .../embassy-esim4/files/digest-embassy-esim4-1.0.0-r4 | 6 ++++++ sci-biology/embassy-hmmer/ChangeLog | 8 +++++++- .../embassy-hmmer/embassy-hmmer-2.3.2-r1.ebuild | 19 +++++++++++++++++++ .../embassy-hmmer/files/digest-embassy-hmmer-2.3.2-r1 | 6 ++++++ sci-biology/embassy-meme/Manifest | 17 +++++++++++++++++ 10 files changed, 101 insertions(+), 3 deletions(-) create mode 100644 sci-biology/embassy-domsearch/embassy-domsearch-0.1.0-r2.ebuild create mode 100644 sci-biology/embassy-domsearch/files/digest-embassy-domsearch-0.1.0-r2 create mode 100644 sci-biology/embassy-esim4/embassy-esim4-1.0.0-r4.ebuild create mode 100644 sci-biology/embassy-esim4/files/digest-embassy-esim4-1.0.0-r4 create mode 100644 sci-biology/embassy-hmmer/embassy-hmmer-2.3.2-r1.ebuild create mode 100644 sci-biology/embassy-hmmer/files/digest-embassy-hmmer-2.3.2-r1 create mode 100644 sci-biology/embassy-meme/Manifest (limited to 'sci-biology') diff --git a/sci-biology/embassy-domsearch/ChangeLog b/sci-biology/embassy-domsearch/ChangeLog index 1e1664f3e350..777c0aa1d109 100644 --- a/sci-biology/embassy-domsearch/ChangeLog +++ b/sci-biology/embassy-domsearch/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/embassy-domsearch # Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domsearch/ChangeLog,v 1.12 2007/02/15 20:13:36 je_fro Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domsearch/ChangeLog,v 1.13 2007/07/18 01:38:29 ribosome Exp $ + +*embassy-domsearch-0.1.0-r2 (18 Jul 2007) + + 18 Jul 2007; Olivier Fisette + +embassy-domsearch-0.1.0-r2.ebuild: + New upstream packaging for EMBOSS 5.0.0. 15 Feb 2007; Jeff Gardner embassy-domsearch-0.1.0-r1.ebuild: diff --git a/sci-biology/embassy-domsearch/embassy-domsearch-0.1.0-r2.ebuild b/sci-biology/embassy-domsearch/embassy-domsearch-0.1.0-r2.ebuild new file mode 100644 index 000000000000..266d0a193a33 --- /dev/null +++ b/sci-biology/embassy-domsearch/embassy-domsearch-0.1.0-r2.ebuild @@ -0,0 +1,13 @@ +# Copyright 1999-2007 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domsearch/embassy-domsearch-0.1.0-r2.ebuild,v 1.1 2007/07/18 01:38:29 ribosome Exp $ + +EBOV="5.0.0" + +inherit embassy + +DESCRIPTION="Protein domain search add-on package for EMBOSS" +SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-${EBOV}.tar.gz + mirror://gentoo/embassy-${EBOV}-${PN:8}-${PV}.tar.gz" + +KEYWORDS="~amd64 ~ppc ~sparc ~x86" diff --git a/sci-biology/embassy-domsearch/files/digest-embassy-domsearch-0.1.0-r2 b/sci-biology/embassy-domsearch/files/digest-embassy-domsearch-0.1.0-r2 new file mode 100644 index 000000000000..c557c311a5f8 --- /dev/null +++ b/sci-biology/embassy-domsearch/files/digest-embassy-domsearch-0.1.0-r2 @@ -0,0 +1,6 @@ +MD5 be4c895220ad34afd65d450ba7d8e34b EMBOSS-5.0.0.tar.gz 20666560 +RMD160 1bf510c0919d991e4ba67182137448dee49bab4d EMBOSS-5.0.0.tar.gz 20666560 +SHA256 64e6f09b82a719ff26de7f21fdf7d2bd605d2c664384c1c7b48f9d245d5f40ae EMBOSS-5.0.0.tar.gz 20666560 +MD5 778ab15bce09a6440fc6859b3a27157d embassy-5.0.0-domsearch-0.1.0.tar.gz 469776 +RMD160 3e6fcdb1b209280026099408be06502f91c1c1fa embassy-5.0.0-domsearch-0.1.0.tar.gz 469776 +SHA256 23e069161ec56df5eab5fc491ca3493c056cfee42f2e05f1b5ef258498792a87 embassy-5.0.0-domsearch-0.1.0.tar.gz 469776 diff --git a/sci-biology/embassy-esim4/ChangeLog b/sci-biology/embassy-esim4/ChangeLog index f79886fb0444..37d2e3ae9fd6 100644 --- a/sci-biology/embassy-esim4/ChangeLog +++ b/sci-biology/embassy-esim4/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/embassy-esim4 # Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-esim4/ChangeLog,v 1.21 2007/02/16 21:44:25 je_fro Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-esim4/ChangeLog,v 1.22 2007/07/18 01:35:55 ribosome Exp $ + +*embassy-esim4-1.0.0-r4 (18 Jul 2007) + + 18 Jul 2007; Olivier Fisette + +embassy-esim4-1.0.0-r4.ebuild: + New upstream packaging for EMBOSS 5.0.0. 16 Feb 2007; Jeff Gardner embassy-esim4-1.0.0-r3.ebuild: diff --git a/sci-biology/embassy-esim4/embassy-esim4-1.0.0-r4.ebuild b/sci-biology/embassy-esim4/embassy-esim4-1.0.0-r4.ebuild new file mode 100644 index 000000000000..f014ee719abc --- /dev/null +++ b/sci-biology/embassy-esim4/embassy-esim4-1.0.0-r4.ebuild @@ -0,0 +1,13 @@ +# Copyright 1999-2007 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-esim4/embassy-esim4-1.0.0-r4.ebuild,v 1.1 2007/07/18 01:35:55 ribosome Exp $ + +EBOV="5.0.0" + +inherit embassy + +DESCRIPTION="EMBOSS integrated version of sim4 - Alignment of cDNA and genomic DNA" +SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-${EBOV}.tar.gz + mirror://gentoo/embassy-${EBOV}-${PN:8}-${PV}.tar.gz" + +KEYWORDS="~amd64 ~ppc ~sparc ~x86" diff --git a/sci-biology/embassy-esim4/files/digest-embassy-esim4-1.0.0-r4 b/sci-biology/embassy-esim4/files/digest-embassy-esim4-1.0.0-r4 new file mode 100644 index 000000000000..ab450b7e97db --- /dev/null +++ b/sci-biology/embassy-esim4/files/digest-embassy-esim4-1.0.0-r4 @@ -0,0 +1,6 @@ +MD5 be4c895220ad34afd65d450ba7d8e34b EMBOSS-5.0.0.tar.gz 20666560 +RMD160 1bf510c0919d991e4ba67182137448dee49bab4d EMBOSS-5.0.0.tar.gz 20666560 +SHA256 64e6f09b82a719ff26de7f21fdf7d2bd605d2c664384c1c7b48f9d245d5f40ae EMBOSS-5.0.0.tar.gz 20666560 +MD5 ee65d0da0f2d75959f370b13f2218c1c embassy-5.0.0-esim4-1.0.0.tar.gz 431329 +RMD160 0197e53eec6e7813d94652152af87d9e20001c56 embassy-5.0.0-esim4-1.0.0.tar.gz 431329 +SHA256 eee1cc8fef40e19fab74b16f1c1cb0883a49561eb9fdc2075f428085c6722bda embassy-5.0.0-esim4-1.0.0.tar.gz 431329 diff --git a/sci-biology/embassy-hmmer/ChangeLog b/sci-biology/embassy-hmmer/ChangeLog index 5a1858975983..93408b1433a3 100644 --- a/sci-biology/embassy-hmmer/ChangeLog +++ b/sci-biology/embassy-hmmer/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/embassy-hmmer # Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-hmmer/ChangeLog,v 1.22 2007/02/15 19:55:38 je_fro Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-hmmer/ChangeLog,v 1.23 2007/07/18 01:40:24 ribosome Exp $ + +*embassy-hmmer-2.3.2-r1 (18 Jul 2007) + + 18 Jul 2007; Olivier Fisette + +embassy-hmmer-2.3.2-r1.ebuild: + New upstream packaging for EMBOSS 5.0.0. 15 Feb 2007; Jeff Gardner embassy-hmmer-2.3.2.ebuild: Added ~amd64 diff --git a/sci-biology/embassy-hmmer/embassy-hmmer-2.3.2-r1.ebuild b/sci-biology/embassy-hmmer/embassy-hmmer-2.3.2-r1.ebuild new file mode 100644 index 000000000000..502cc0f3fa68 --- /dev/null +++ b/sci-biology/embassy-hmmer/embassy-hmmer-2.3.2-r1.ebuild @@ -0,0 +1,19 @@ +# Copyright 1999-2007 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-hmmer/embassy-hmmer-2.3.2-r1.ebuild,v 1.1 2007/07/18 01:40:24 ribosome Exp $ + +EBOV="5.0.0" + +inherit embassy + +DESCRIPTION="EMBOSS integrated version of HMMER - Biological sequence analysis with profile HMMs" +SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-${EBOV}.tar.gz + mirror://gentoo/embassy-${EBOV}-${PN:8}-${PV}.tar.gz" + +KEYWORDS="~amd64 ~ppc ~sparc ~x86" + +src_install() { + embassy_src_install + insinto /usr/include/emboss/hmmer + doins src/*.h +} diff --git a/sci-biology/embassy-hmmer/files/digest-embassy-hmmer-2.3.2-r1 b/sci-biology/embassy-hmmer/files/digest-embassy-hmmer-2.3.2-r1 new file mode 100644 index 000000000000..c86b987b7a0b --- /dev/null +++ b/sci-biology/embassy-hmmer/files/digest-embassy-hmmer-2.3.2-r1 @@ -0,0 +1,6 @@ +MD5 be4c895220ad34afd65d450ba7d8e34b EMBOSS-5.0.0.tar.gz 20666560 +RMD160 1bf510c0919d991e4ba67182137448dee49bab4d EMBOSS-5.0.0.tar.gz 20666560 +SHA256 64e6f09b82a719ff26de7f21fdf7d2bd605d2c664384c1c7b48f9d245d5f40ae EMBOSS-5.0.0.tar.gz 20666560 +MD5 3aa5707db81854f2674bf27aaeb1362e embassy-5.0.0-hmmer-2.3.2.tar.gz 565223 +RMD160 c36c09c74823645e9b557576692646731223ac1b embassy-5.0.0-hmmer-2.3.2.tar.gz 565223 +SHA256 31bbcca1f71b82170a65c4438f9cb9f1dfe3d4e066037a852060b010e3e39b5b embassy-5.0.0-hmmer-2.3.2.tar.gz 565223 diff --git a/sci-biology/embassy-meme/Manifest b/sci-biology/embassy-meme/Manifest new file mode 100644 index 000000000000..083b6a63c1d1 --- /dev/null +++ b/sci-biology/embassy-meme/Manifest @@ -0,0 +1,17 @@ +DIST EMBOSS-5.0.0.tar.gz 20666560 RMD160 1bf510c0919d991e4ba67182137448dee49bab4d SHA1 1ad4edc4808a8225fe8d574e8a7d0686be99cac6 SHA256 64e6f09b82a719ff26de7f21fdf7d2bd605d2c664384c1c7b48f9d245d5f40ae +DIST embassy-5.0.0-meme-0.1.0.tar.gz 448413 RMD160 eb5ac6315bf33190133f7f9df626ec58ccbf9de0 SHA1 21fdebf9a294aa0bdad70317c0c11f61e79e0cf9 SHA256 ed4c02010af036515203661c28776b5e773e77eccad59990b7ac1410399d45ef +EBUILD embassy-meme-0.1.0.ebuild 606 RMD160 f69d3ae8a043f0986d7432329bb031f4d8ecf614 SHA1 807d908f3f60f8988d40802f67fcec8a84adf622 SHA256 b0ed06ff0432865685f43c29470e785105125d6528729b8a236065951eff981d +MD5 8b42bb814fb9285e54cde7f754b2e226 embassy-meme-0.1.0.ebuild 606 +RMD160 f69d3ae8a043f0986d7432329bb031f4d8ecf614 embassy-meme-0.1.0.ebuild 606 +SHA256 b0ed06ff0432865685f43c29470e785105125d6528729b8a236065951eff981d embassy-meme-0.1.0.ebuild 606 +MISC ChangeLog 441 RMD160 7725666575bf2aff226cea6694144d455ea1fdb5 SHA1 d08a8db7904e7aa42fb9aaae121c8908ba72d093 SHA256 f4847bab99d5c6d3149db5d1fbb7124a6cdaba2c176a20368563a564ba33e7fa +MD5 d84f492596aed91d07bfa7d8abaf1585 ChangeLog 441 +RMD160 7725666575bf2aff226cea6694144d455ea1fdb5 ChangeLog 441 +SHA256 f4847bab99d5c6d3149db5d1fbb7124a6cdaba2c176a20368563a564ba33e7fa ChangeLog 441 +MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f +MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262 +RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262 +SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262 +MD5 7e988e6e7f835b7a77269e05d4a734b4 files/digest-embassy-meme-0.1.0 518 +RMD160 f48db90a6b690617d5667985f522266de62823ea files/digest-embassy-meme-0.1.0 518 +SHA256 4b2bbc83111dfebd8704e18be082fe24ebdd5398df795eb99bb223c30ebc52c7 files/digest-embassy-meme-0.1.0 518 -- cgit v1.2.3-65-gdbad