From d14abfcd153c3b5f48fff21bc229afc85ccf66e3 Mon Sep 17 00:00:00 2001
From: Justin Lecher <jlec@gentoo.org>
Date: Mon, 18 May 2015 06:32:10 +0000
Subject: Drop old

Package-Manager: portage-2.2.18/cvs/Linux x86_64
Manifest-Sign-Key: 0xE9402A79B03529A2!
---
 sci-chemistry/tm-align/ChangeLog                |  5 ++++-
 sci-chemistry/tm-align/Manifest                 | 26 +++++++++++++++++--------
 sci-chemistry/tm-align/tm-align-20130511.ebuild | 25 ------------------------
 3 files changed, 22 insertions(+), 34 deletions(-)
 delete mode 100644 sci-chemistry/tm-align/tm-align-20130511.ebuild

(limited to 'sci-chemistry')

diff --git a/sci-chemistry/tm-align/ChangeLog b/sci-chemistry/tm-align/ChangeLog
index a74d3aee26c1..6d4c009f9d6f 100644
--- a/sci-chemistry/tm-align/ChangeLog
+++ b/sci-chemistry/tm-align/ChangeLog
@@ -1,6 +1,9 @@
 # ChangeLog for sci-chemistry/tm-align
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/ChangeLog,v 1.17 2015/05/17 20:19:32 pacho Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/ChangeLog,v 1.18 2015/05/18 06:32:09 jlec Exp $
+
+  18 May 2015; Justin Lecher <jlec@gentoo.org> -tm-align-20130511.ebuild:
+  Drop old
 
   17 May 2015; Pacho Ramos <pacho@gentoo.org> tm-align-20140601.ebuild:
   ppc64 stable wrt bug #549332
diff --git a/sci-chemistry/tm-align/Manifest b/sci-chemistry/tm-align/Manifest
index 0e5848e2902a..5fac2267cfac 100644
--- a/sci-chemistry/tm-align/Manifest
+++ b/sci-chemistry/tm-align/Manifest
@@ -1,17 +1,27 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
 
 AUX CMakeLists.txt 182 SHA256 e6543e2fba46dc09d1892106b1d9c154485ee269d2b88c16a1973605fae44b53 SHA512 1e77edbfb2184e11c09fc2133eb40bd9d4b2fb04a30139134939482f4e817ebfa5c316e8d75a6fd5aa866ef1f6f56d65df924dc41cfb698330943e0bc433948d WHIRLPOOL 370a6b0e2ba20b7c7316aaba34b6dd6962673014fa7d2aee8ae04630b98abb24f5302eca80ea4c92d84fea149c98003d4b5c1ac44266a488cc937f06f51f6192
-DIST TMtools20130511.tar.gz 934272 SHA256 8d721481ce481085fe7fc2dde0d374dd7b5f0a6242702c77d194deb7fc8417b7 SHA512 aad15e7d71f9aaab1e7268e5e8b410de8917a9a3a41d5c3ad09e2a4beb8fc8240b78662a0389d2772ebeac9921a79b86bd44316b1ea7d9bbde566a610f7bf5ae WHIRLPOOL e6628255a22022db2a5deef8b6b356a36b588561a7576b571bb0ce3ca030ebe31076f0b4965ccde73f15969eba1c397810115b892cd9e87e97040dcb11fddfab
 DIST TMtools20140601.tar.gz 934391 SHA256 5032f7ab1824c8b2191b4a3667e1405feb6ccf7c900f57632aa506fff8ec1bf5 SHA512 99b90425ff051c836e19225601ddfb1576bec9c8f233aafeba96075f924a3c0892b5b1cfef36254ff5ef468a6dbf64f7fcc9a3ce24a0d869b3c1eb87c0149765 WHIRLPOOL 5ba7d9cb71e3055dff62851c68e127314b9ca70c4bbc39aeba35e5a4b02dc0cffeacb52c6369c90875d8062603c830acf604cfc339bdecfeb3dd6c10015e20de
-EBUILD tm-align-20130511.ebuild 817 SHA256 28543aae1e07349b2a3faa37022d2fc1db9bc37fc9f350367554a5ef285214f0 SHA512 f5da70b09383ee187755336b0d10e0c7dc9b1d594ef48f56699c5a9fbde46d7a271417fa8cf6623e845faa3b8c0de2f7f5e397bb28be1a9f52dc5573922ad8fa WHIRLPOOL 353d7d11d22482833fe08c3504ae1bf8cbd1314b95d66e30697980cfd33dc334d4aa83eeb234b8357dba35f51cd68676726d307f931c989de1e6aafeb5571b4b
 EBUILD tm-align-20140601.ebuild 815 SHA256 adadc82b4b408d90087dd9df02464a53bef24cf7d44f1babb9b5575fd1da8f72 SHA512 102ba209b49b9263a170832b782554ac7639c94e58952d84d2dd7cd7eaa8814add690b016422ce42327dc9c66094cdeca1c9ddc1f6e47fb528daaa7352b8941f WHIRLPOOL 3fcbb93570b54787aa660aa3162a2733f22f653b64fb118a179de2fc9d8f3014969a4e4de7f7fdd803347d0a70b429d1075064c5d24f08e195f7bcbbb19f4ae7
-MISC ChangeLog 2304 SHA256 2c7d393c9ce71596dea2821609532c43b3d06f9ac85ec70a2142e7f88e99c422 SHA512 e6e66d34966d8754b17f3da441e62e6838897de114601a64ddd4889fa645652b9617c5e4f31c7675ad7141bc29b2f19d2c94c00ce8fda9ea2b7d490c1f06b3eb WHIRLPOOL 58d68c80bf5d37922eb0a89068d4623b127ca234efbd9a3ec843707171e17fbbb660eb4c0aedad94861d81b4a2b6bab92d6d89c6928676ad49ba5eccdde02a3a
+MISC ChangeLog 2389 SHA256 f157cdec36f5cba4376118b523b8e33fda88ccaa37996d28bc16575d03dd556d SHA512 05b4f47350faa98113ab210b56cd95d18c0f4bc08f64b1c3536f48e992687a0e44f36532be1c1d8e2d16185c13b6785a6728e7976b81fd623ac46a6503e39a57 WHIRLPOOL e0d90cf549cfecd1fb4c9af270ad5b4a73b95d10086044414b58114fca3bcee5676925eaa8b911158e539522dd157517e3d17374a9ebafaff40affc4543f206f
 MISC metadata.xml 1257 SHA256 73dc4e2f6cf1c2318fa6c1b70746496268504d29e7eb9285a35c2921362de352 SHA512 120eeef02ef1d867cce7c65ab7b4d3d286502fb36397facf093f3fe77dddf4530ad7858c20e7e58edc87850fc435a0492335b5e18b08b18653b7d4b18e415dd5 WHIRLPOOL 9748dff6b7ea8f3f6387f270b8c93d856031ba3b941ff9eac7f73712e673bc126dffaecc0eb328733bb43fbc7e7989edfe213b6c0f5bbc3db6f08e9f36273e7d
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+Version: GnuPG v2.1
 
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diff --git a/sci-chemistry/tm-align/tm-align-20130511.ebuild b/sci-chemistry/tm-align/tm-align-20130511.ebuild
deleted file mode 100644
index fd3122a73232..000000000000
--- a/sci-chemistry/tm-align/tm-align-20130511.ebuild
+++ /dev/null
@@ -1,25 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/tm-align-20130511.ebuild,v 1.6 2015/05/13 06:57:34 jmorgan Exp $
-
-EAPI=5
-
-inherit cmake-utils flag-o-matic fortran-2
-
-DESCRIPTION="Quick & Accurate Structural Alignment"
-HOMEPAGE="http://zhanglab.ccmb.med.umich.edu/TM-align/"
-SRC_URI="http://zhanglab.ccmb.med.umich.edu/TM-align/TMtools${PV}.tar.gz"
-
-LICENSE="tm-align"
-SLOT="0"
-KEYWORDS="amd64 ppc ppc64 x86 ~amd64-linux ~x86-linux"
-IUSE="static custom-cflags"
-
-S="${WORKDIR}"
-
-src_prepare() {
-	cp "${FILESDIR}"/CMakeLists.txt . || die
-	use static && append-fflags -static && append-ldflags -static
-	# recommended by upstream
-	use custom-cflags || replace-flags -O* -O3 && append-fflags -ffast-math
-}
-- 
cgit v1.2.3-65-gdbad