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* sci-libs/vtk: drop native CUDA archBernd Waibel2023-01-233-6/+50
| | | | | | | | | | Backport from 9.2.5, until detection is fixed upstream, don't allow the use of VTK_CUDA_ARCH=native. Bug: https://bugs.gentoo.org/835659 Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Closes: https://github.com/gentoo/gentoo/pull/29200 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/vtk: add 9.2.5Bernd Waibel2023-01-232-0/+749
| | | | | | | | | | | | | | - Add Python 3.11 support. - Simplifiy test logic. The VTK_FORBID_DOWNLOADS option now also works when testing is enabled, if all data files are downloaded and regenerated before testing. - Drop native CUDA arch as long as detection isn't fixed upstream. Bug: https://gitlab.kitware.com/vtk/vtk-m/issues/693 Bug: https://bugs.gentoo.org/835659 Closes: https://bugs.gentoo.org/890269 Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/pdal: bump 2.5.0Thomas Bettler2023-01-203-0/+156
| | | | | | Closes: https://github.com/gentoo/gentoo/pull/29173 Signed-off-by: Thomas Bettler <thomas.bettler@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libcmatrix: Remove last-rited pkgMichał Górny2023-01-1911-497/+0
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/brial: add 1.2.12François Bissey2023-01-162-0/+37
| | | | | | | Closes: https://github.com/gentoo/gentoo/pull/29111 Closes: https://bugs.gentoo.org/890425 Signed-off-by: Michael Orlitzky <mjo@gentoo.org> Signed-off-by: François Bissey <frp.bissey@gmail.com>
* sci-libs/fplll: add 5.4.4François Bissey2023-01-162-0/+30
| | | | | | Closes: https://github.com/gentoo/gentoo/pull/29113 Signed-off-by: Michael Orlitzky <mjo@gentoo.org> Signed-off-by: François Bissey <frp.bissey@gmail.com>
* */*: remove py3.8 from PYTHON_COMPATDavid Seifert2023-01-1454-103/+103
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/inchi: Stabilize 1.06-r1 ppc, #883913Arthur Zamarin2023-01-131-2/+2
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/libqalculate: Stabilize 4.3.0 sparc, #888908Arthur Zamarin2023-01-131-2/+2
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/proj: Stabilize 9.1.1-r1 ppc, #889810Arthur Zamarin2023-01-131-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/symmetrica: update EAPI 7 -> 8Michael Orlitzky2023-01-131-0/+24
| | | | | Closes: https://bugs.gentoo.org/890668 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/caffe2: fix build with clangAlfredo Tupone2023-01-122-0/+44
| | | | | Closes: https://bugs.gentoo.org/886273 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/gloo: require openssl 1.1Alfredo Tupone2023-01-121-2/+2
| | | | | Closes: https://bugs.gentoo.org/886279 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/NNPACK: drop changes to optimization optionAlfredo Tupone2023-01-111-1/+6
| | | | | Closes: https://bugs.gentoo.org/886357 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/keras: Remove Python < 3.10Michał Górny2023-01-102-4/+4
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/tensorflow-estimator: Remove Python < 3.10Michał Górny2023-01-102-4/+4
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/tensorflow: Remove Python < 3.10Michał Górny2023-01-102-4/+4
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/scikit-image: drop 0.19.3Arthur Zamarin2023-01-101-54/+0
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/libigl: Stabilize 2.4.0 amd64, #888525Sam James2023-01-091-2/+2
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/proj: Stabilize 9.1.1-r1 x86, #889810Sam James2023-01-051-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/proj: Stabilize 9.1.1-r1 amd64, #889810Sam James2023-01-051-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/proj: Stabilize 9.1.1-r1 arm64, #889810Sam James2023-01-051-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/proj: Stabilize 9.1.1-r1 ppc64, #889810Sam James2023-01-051-2/+2
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: add 3.6.2Sam James2023-01-052-0/+245
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/caffe2: remove last WerrorAlfredo Tupone2023-01-041-11/+27
| | | | | Closes: https://bugs.gentoo.org/889444 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/opencascade: simplify vtk logic (v7.6.3)Bernd Waibel2023-01-041-7/+4
| | | | | | | | Backport patch from v7.7.0 Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Closes: https://github.com/gentoo/gentoo/pull/28932 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/opencascade: simplify vtk logic (v7.7.0)Bernd Waibel2023-01-041-7/+4
| | | | | | | | Avoid using conditional logic to determine the include directory for VTK. Suggested-by: Sam James <sam@gentoo.org> Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Signed-off-by: Sam James <sam@gentoo.org>
* */*: make mycmakeargs localDavid Seifert2023-01-031-2/+2
| | | | | Closes: https://github.com/gentoo/gentoo/pull/28947 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/pytorch: use single python classAlfredo Tupone2023-01-031-4/+9
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/caffe2: inherit single and mv api in python dirAlfredo Tupone2023-01-031-13/+13
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/dealii: fix missing dependency on sci-mathematics/cgalMatthias Maier2023-01-021-1/+2
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/mumps: avoid a race conditionMatthias Maier2023-01-021-2/+3
| | | | | Closes: https://bugs.gentoo.org/889072 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/sundials: add 6.5.0Matthias Maier2023-01-022-0/+118
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/pyshp: Add missing test depThomas Beierlein2023-01-021-3/+4
| | | | | Closes: https://bugs.gentoo.org/888735 Signed-off-by: Thomas Beierlein <tomjbe@gentoo.org>
* */*: adapt to USE=heif being a global USE flagSam James2022-12-311-1/+0
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/opencascade: build 7.6.3 against vtk-9.2Bernd Waibel2022-12-311-13/+12
| | | | | | | | | Backport patch from v7.7.0 Bug: https://bugs.gentoo.org/886343 Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Closes: https://github.com/gentoo/gentoo/pull/28704 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/opencascade: build 7.7.0 against vtk-9.2Bernd Waibel2022-12-312-16/+45
| | | | | | | | cleanup some X related libraries Closes: https://bugs.gentoo.org/886343 Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libqalculate: Stabilize 4.3.0 arm64, #888908Sam James2022-12-291-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libqalculate: Stabilize 4.3.0 amd64, #888908Sam James2022-12-291-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libqalculate: Stabilize 4.3.0 ppc64, #888908Sam James2022-12-291-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libqalculate: Stabilize 4.3.0 x86, #888908Sam James2022-12-291-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libqalculate: add 4.5.0Sam James2022-12-294-0/+170
| | | | | Bug: https://bugs.gentoo.org/887369 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/rocBLAS: remove unused patchesMichael Mair-Keimberger2022-12-292-119/+0
| | | | | | Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Closes: https://github.com/gentoo/gentoo/pull/28862 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/gdal: drop 3.6.1Andrew Ammerlaan2022-12-291-242/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/gdal: disable podofo support to address automagic dependencyChristophe Lermytte2022-12-291-0/+243
| | | | | | | | | | | | With podofo installed, libgdal.so.32.3.6.1 depends on libpodofo.so.0.9.8. Let's simply not use podofo, similar to how pdfium is already being disabled (though that's probably just because it is not in the tree) Closes: https://bugs.gentoo.org/888653 Signed-off-by: Christophe Lermytte <gentoo@lermytte.be> Closes: https://github.com/gentoo/gentoo/pull/28864 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/cartopy: add 0.21.1Thomas Beierlein2022-12-282-0/+82
| | | | Signed-off-by: Thomas Beierlein <tomjbe@gentoo.org>
* sci-libs/cartopy: drop 0.20.3-r3Thomas Beierlein2022-12-282-79/+0
| | | | Signed-off-by: Thomas Beierlein <tomjbe@gentoo.org>
* sci-libs/pyshp: Bump to 2.3.1. Add python-3.11 supportThomas Beierlein2022-12-283-0/+29
| | | | Signed-off-by: Thomas Beierlein <tomjbe@gentoo.org>
* sci-libs/htslib: update remote-idDavid Seifert2022-12-271-7/+7
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/htslib: add 1.16David Seifert2022-12-272-0/+53
| | | | Signed-off-by: David Seifert <soap@gentoo.org>