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* sci-libs/nlopt: enable py3.10Arthur Zamarin2021-10-251-2/+2
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/tensorflow: Fix build with >=CUDA-11.3Jason Zaman2021-10-244-456/+5
| | | | | | Closes: https://bugs.gentoo.org/815244 Package-Manager: Portage-3.0.20, Repoman-3.0.3 Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* sci-libs/geos: add 3.10.0Sam James2021-10-252-0/+44
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gsl: drop 1.16, 2.5-r1David Seifert2021-10-255-188/+0
| | | | | Closes: https://github.com/gentoo/gentoo/pull/22607 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/superlu: Stabilize 5.2.2 arm64, #813567Sam James2021-10-241-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/pastix: Stabilize 5.2.3 arm64, #813567Sam James2021-10-241-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/scotch: Stabilize 6.0.4-r2 arm64, #813567Sam James2021-10-241-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/adolc: Stabilize 2.7.2 arm64, #813567Sam James2021-10-241-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/colpack: Stabilize 1.0.10 arm64, #813567Sam James2021-10-241-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gsl: Stabilize 2.7 sparc, #804795Sam James2021-10-241-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gsl: Stabilize 2.7 x86, #804795Sam James2021-10-241-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/opencascade: bump to 7.5.3Bernd Waibel2021-10-242-0/+172
| | | | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Closes: https://github.com/gentoo/gentoo/pull/22669 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/lrslib: Stabilize 071b amd64, #819555Sam James2021-10-231-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/lrslib: new revision with CFLAGS/LDFLAGS patches.Michael Orlitzky2021-10-233-0/+345
| | | | | | | | | | The LDFLAGS patch here is new, and fixes bug 728044. The CFLAGS patch merely replaces an inline "sed", but will allow me to send this change upstream (where they've made an effort to use CFLAGS before). Closes: https://bugs.gentoo.org/728044 Package-Manager: Portage-3.0.20, Repoman-3.0.3 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/lrslib: new upstream version 071b.Michael Orlitzky2021-10-222-0/+59
| | | | | | | | The existing lrslib-071 fails to install an important header, and is therefore unusable as a library. This should fix it. Package-Manager: Portage-3.0.20, Repoman-3.0.3 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/cgcode: Port to EAPI 8Jakov Smolić2021-10-212-15/+11
| | | | | Closes: https://bugs.gentoo.org/688888 Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/clashscore-db: Port to EAPI 8Jakov Smolić2021-10-211-6/+4
| | | | Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/gdal: Stabilize 3.3.2-r1 arm64, #818538Sam James2021-10-201-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libcifpp: Bump to 2.0.3Pacho Ramos2021-10-192-0/+37
| | | | | Package-Manager: Portage-3.0.24, Repoman-3.0.3 Signed-off-by: Pacho Ramos <pacho@gentoo.org>
* sci-libs/gdal: x86 stable wrt bug #818538Agostino Sarubbo2021-10-181-1/+1
| | | | | | Package-Manager: Portage-3.0.20, Repoman-3.0.3 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/netcdf-cxx: Stabilize 4.3.1 x86, #818643Sam James2021-10-171-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/netcdf-cxx: Stabilize 4.3.1 amd64, #818643Sam James2021-10-171-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: Stabilize 3.3.2-r1 amd64, #818538Sam James2021-10-171-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/scotch: add 6.1.1Sam James2021-10-172-0/+175
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/tensorflow: add upper bound on grpc for nowSam James2021-10-171-1/+1
| | | | | Closes: https://bugs.gentoo.org/817212 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: fix automagic libheifSam James2021-10-172-1/+4
| | | | | Closes: https://bugs.gentoo.org/818514 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/tensorflow: Fix system protobufJason Zaman2021-10-162-0/+414
| | | | | | | | | When tensorflow and python protobuf use the same instance of libprotobuf, pywrap_tensorflow must be imported before anything else that would import protobuf definitions. Package-Manager: Portage-3.0.20, Repoman-3.0.3 Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* sci-libs/scikit-image: add github upstream metadataArthur Zamarin2021-10-141-0/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/libqalculate: add 3.21.0Jakov Smolić2021-10-142-0/+75
| | | | Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/szip: drop 2.1-r2Jakov Smolić2021-10-142-31/+0
| | | | Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/szip: Revert "drop 2.1.1"Jakov Smolić2021-10-142-0/+31
| | | | | | | | * I've accidentaly removed version 2.1.1 instead of 2.1 This reverts commit 0ce003d9c0ff4b5d4670516b890e67b677a004a1. Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/szip: drop 2.1.1Jakov Smolić2021-10-132-31/+0
| | | | Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/szip: Stabilize 2.1.1 ppc64, #816195Sam James2021-10-131-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/superlu_mt: update EAPI 6 -> 8Marek Szuba2021-10-131-14/+14
| | | | Signed-off-by: Marek Szuba <marecki@gentoo.org>
* sci-libs/superlu: update HOMEPAGEMarek Szuba2021-10-131-1/+1
| | | | Signed-off-by: Marek Szuba <marecki@gentoo.org>
* sci-libs/superlu_mt: update HOMEPAGE, SRC_URIMarek Szuba2021-10-131-2/+2
| | | | Signed-off-by: Marek Szuba <marecki@gentoo.org>
* sci-libs/sundials: update HOMEPAGEMarek Szuba2021-10-131-1/+1
| | | | Signed-off-by: Marek Szuba <marecki@gentoo.org>
* sci-libs/sundials: implement USE=int64Marek Szuba2021-10-132-2/+4
| | | | | | | | | | | | | | | | | | What it already does: * allows changing the index size from 64 (default) to 32 bits * if USE=superlumt is set makes sure the state of USE=int64 in sci-libs/superlu_mt is the same as here, so that the assumption about index-type compatibility made in sunlinsol_superlumt.h is correct * allows test_sunlinsol_superlumt_300_0_1_0 and test_sunlinsol_superlumt_300_1_1_0 to pass *if USE=-int64* What still needs work: * getting the two superlumt tests to pass for USE=int64 - they still fail with "COLAMD failed at line 58 in file get_perm_c.c" Bug: https://bugs.gentoo.org/817680 Signed-off-by: Marek Szuba <marecki@gentoo.org>
* sci-libs/openlibm: bump to 0.8.0Jakov Petrina2021-10-122-0/+34
| | | | | | | | | Bump package to new upstream version 0.8.0. Update EAPI to latest version (8) as well. Signed-off-by: Jakov Petrina <jakov.petrina@sartura.hr> Closes: https://github.com/gentoo/gentoo/pull/22563 Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/avogadrolibs: apply (upstream) workaround for older hdf5lib APISam James2021-10-121-1/+6
| | | | | Bug: https://bugs.gentoo.org/810505 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/h5hut: add comment to ebuild on < hdf5 depSam James2021-10-121-0/+2
| | | | | Bug: https://bugs.gentoo.org/809221 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/h5hut: depend on older hdf5lib for nowSam James2021-10-121-2/+2
| | | | | | | Doesn't seem to build with newer versions. Bug: https://bugs.gentoo.org/809221 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hdf5: workaround build failure with older hdf5 installedSam James2021-10-121-0/+4
| | | | | | | | Thanks to upstream for the helpful suggestion! Bug: https://github.com/HDFGroup/hdf5/issues/1027 Closes: https://bugs.gentoo.org/808633 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/qrupdate: keyword 1.1.2-r2 for ~riscvAlex Fan2021-10-121-1/+1
| | | | | Signed-off-by: Alex Fan <alexfanqi@yahoo.com> Signed-off-by: Yixun Lan <dlan@gentoo.org>
* sci-libs/cxsparse: keyword 3.2.0 for ~riscvAlex Fan2021-10-121-1/+1
| | | | | Signed-off-by: Alex Fan <alexfanqi@yahoo.com> Signed-off-by: Yixun Lan <dlan@gentoo.org>
* sci-libs/htslib: drop 1.10.2David Seifert2021-10-112-52/+0
| | | | | | | Bug: https://bugs.gentoo.org/799788 Signed-off-by: David Seifert <soap@gentoo.org> Closes: https://github.com/gentoo/gentoo/pull/22556 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/cln: keyword 1.3.6 for ~riscvAlex Fan2021-10-111-2/+2
| | | | | Signed-off-by: Alex Fan <alexfanqi@yahoo.com> Signed-off-by: Yixun Lan <dlan@gentoo.org>
* sci-libs/libcifpp: Keyword 1.1.1 x86, #811417Sam James2021-10-101-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/metis: remove unused patchMichael Mair-Keimberger2021-10-101-12/+0
| | | | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Closes: https://github.com/gentoo/gentoo/pull/22547 Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/liborigin: remove unused patchesMichael Mair-Keimberger2021-10-104-503/+0
| | | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>