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* sci-libs/arpack: mark as LTO-unsafeEli Schwartz2024-03-062-4/+18
| | | | | | | | | It fails in tests, but unfortunately that means we cannot... test... compiling with LTO. Closes: https://bugs.gentoo.org/878139 Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/profnet: mark as LTO-unsafeEli Schwartz2024-03-061-1/+7
| | | | | | Closes: https://bugs.gentoo.org/862921 Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/alglib: filter LTO, no-SASam James2024-03-051-1/+6
| | | | | | | | The package in Gentoo is quite out of date so I can't easily test the latest version to report upstream. Has SA violations. Closes: https://bugs.gentoo.org/862666 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/openblas: drop 0.3.21-r1, 0.3.23Sam James2024-03-047-1319/+0
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/arpack: drop 3.8.0-r1, 3.9.0-r1Sam James2024-03-043-123/+0
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/lapack: drop 3.10.1Sam James2024-03-042-94/+0
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/lapack: restore filter-ltoSam James2024-03-041-1/+4
| | | | | | | | In 58d080c1bad9b1c0d307f2cf2d0251d60025efb1, we dropped filter-lto, but the testsuite still fails to build with LTO, so put it back. Bug: https://bugs.gentoo.org/878891 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/dcmtk: Apply musl-1.2.4 largefile workaroundAndreas K. Hüttel2024-03-041-1/+4
| | | | | Bug: https://bugs.gentoo.org/908398 Signed-off-by: Andreas K. Hüttel <dilfridge@gentoo.org>
* sci-libs/lapack: drop unused flag-o-maticSam James2024-03-031-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/lapack: backport 64-bit API fix detected by LTO warningsEli Schwartz2024-03-032-0/+153
| | | | | | | | https://github.com/Reference-LAPACK/lapack/issues/990#issuecomment-1973258284 Bug: https://bugs.gentoo.org/878891 Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/nlopt: Stabilize 2.7.1-r2 ppc64, #924846Arthur Zamarin2024-03-021-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/libigl: dropped obsolete 2.4.0Miroslav Šulc2024-03-022-58/+0
| | | | | Bug: https://bugs.gentoo.org/925908 Signed-off-by: Miroslav Šulc <fordfrog@gentoo.org>
* sci-libs/ideep: add 3.3.2Alfredo Tupone2024-03-012-0/+21
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/caffe2: depends on ideepAlfredo Tupone2024-03-012-6/+4
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/ideep: new package, add 3.1.1Alfredo Tupone2024-03-014-0/+70
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/libigl: Stabilize 2.5.0 amd64, #925908Arthur Zamarin2024-03-011-2/+2
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/HighFive: Remove oldMichał Górny2024-02-282-70/+0
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/cantera: Remove oldMichał Górny2024-02-286-426/+0
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/lapack: mark as LTO-unsafeEli Schwartz2024-02-282-3/+13
| | | | | | Bug: https://bugs.gentoo.org/878891 Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/HighFive: Stabilize 2.8.0 amd64, #925694Sam James2024-02-281-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/cantera: Stabilize 3.0.0-r1 amd64, #925694Sam James2024-02-281-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libsemigroups: add 2.7.3, drop 2.7.2Michael Orlitzky2024-02-242-1/+1
| | | | Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/caffe2: rm install on /var/tmpAlfredo Tupone2024-02-241-0/+1
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/keras: treecleanJakov Smolić2024-02-244-432/+0
| | | | | | | | Closes: https://bugs.gentoo.org/823866 Closes: https://bugs.gentoo.org/797277 Closes: https://bugs.gentoo.org/897214 Closes: https://bugs.gentoo.org/910026 Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/tensorflow: treecleanJakov Smolić2024-02-2416-2351/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug: https://bugs.gentoo.org/807625 Closes: https://bugs.gentoo.org/906609 Closes: https://bugs.gentoo.org/905673 Closes: https://bugs.gentoo.org/913731 Closes: https://bugs.gentoo.org/882617 Closes: https://bugs.gentoo.org/881445 Closes: https://bugs.gentoo.org/915621 Closes: https://bugs.gentoo.org/909002 Closes: https://bugs.gentoo.org/705712 Closes: https://bugs.gentoo.org/873295 Closes: https://bugs.gentoo.org/907031 Closes: https://bugs.gentoo.org/909003 Closes: https://bugs.gentoo.org/909767 Closes: https://bugs.gentoo.org/913534 Closes: https://bugs.gentoo.org/818766 Closes: https://bugs.gentoo.org/830167 Closes: https://bugs.gentoo.org/854354 Closes: https://bugs.gentoo.org/851573 Closes: https://bugs.gentoo.org/780468 Closes: https://bugs.gentoo.org/910029 Closes: https://bugs.gentoo.org/897228 Closes: https://bugs.gentoo.org/844196 Closes: https://bugs.gentoo.org/910030 Closes: https://bugs.gentoo.org/897230 Closes: https://bugs.gentoo.org/788064 Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/tensorflow-estimator: treecleanJakov Smolić2024-02-245-831/+0
| | | | | | | Closes: https://bugs.gentoo.org/910030 Closes: https://bugs.gentoo.org/897230 Closes: https://bugs.gentoo.org/788064 Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/gloo: add 2023.07.19, drop 2023.05.19-r2Alfredo Tupone2024-02-232-3/+3
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/branca: fix BDEPENDAlfredo Tupone2024-02-231-3/+6
| | | | | Closes: https://bugs.gentoo.org/924877 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/tokenizers: drop QA_CHECK for musl build, tooAlfredo Tupone2024-02-231-1/+1
| | | | | Closes: https://bugs.gentoo.org/924970 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/datasets: drop test that need networkAlfredo Tupone2024-02-223-233/+240
| | | | | Closes: https://bugs.gentoo.org/925220 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/kissfft: add github upstream metadataDavid Roman2024-02-221-0/+3
| | | | | | Closes: https://github.com/gentoo/gentoo/pull/35132 Signed-off-by: David Roman <davidroman96@gmail.com> Signed-off-by: Yixun Lan <dlan@gentoo.org>
* sci-libs/kissfft: add cmake patchDavid Roman2024-02-223-4/+94
| | | | | | | | | Also: - update EAPI 7 -> 8 - add python12 support Signed-off-by: David Roman <davidroman96@gmail.com> Signed-off-by: Yixun Lan <dlan@gentoo.org>
* sci-libs/datasets: add 2.17.1, drop 2.16.0Alfredo Tupone2024-02-224-32/+17
| | | | | Bug: https://bugs.gentoo.org/921090 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/hdf5: Stabilize 1.14.3-r1 sparc, #923536Matoro Mahri2024-02-211-1/+1
| | | | | Signed-off-by: Matoro Mahri <matoro_gentoo@matoro.tk> Signed-off-by: Ionen Wolkens <ionen@gentoo.org>
* sci-libs/datasets: drop test that require networkAlfredo Tupone2024-02-212-58/+116
| | | | | Closes: https://bugs.gentoo.org/925171 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/datasets: add 2.16.0, drop 2.15.0Alfredo Tupone2024-02-214-49/+92
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/evaluate: drop a failing testAlfredo Tupone2024-02-211-0/+8
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/huggingface_hub: add 0.19.4, drop 0.18.0Alfredo Tupone2024-02-212-1/+1
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/huggingface_hub: add 0.18.0, drop 0.17.3Alfredo Tupone2024-02-212-1/+1
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/datasets: missing a patchAlfredo Tupone2024-02-211-0/+46
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/huggingface_hub: add 0.17.3, drop 0.16.4-r1Alfredo Tupone2024-02-212-2/+2
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/datasets: add 2.15.0, drop 2.14.7Alfredo Tupone2024-02-202-3/+6
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/pcl: drop 1.12.1-r2, 1.13.1Andreas Sturmlechner2024-02-204-225/+0
| | | | Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/onnx: always depends on pythonAlfredo Tupone2024-02-191-20/+24
| | | | | Closes: https://bugs.gentoo.org/924937 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/pcl: Stabilize 1.14.0 amd64, #924930Sam James2024-02-191-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/fflas-ffpack: disable another flaky testMichael Orlitzky2024-02-182-0/+31
| | | | | Closes: https://bugs.gentoo.org/924880 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/onnx: fix build on muslAlfredo Tupone2024-02-182-1/+15
| | | | | Closes: https://bugs.gentoo.org/924878 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/caffe2: allow use of openblasAlfredo Tupone2024-02-172-2/+6
| | | | | Closes: https://bugs.gentoo.org/923455 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/dealii: add 9.5.2, drop 9.5.1Matthias Maier2024-02-152-2/+4
| | | | | | | - apply mpich fix Closes: https://bugs.gentoo.org/920556 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/dealii: add 9.4.2, drop 9.4.1-r1Matthias Maier2024-02-154-4/+94
| | | | | | | - apply mpich fix Bug: https://bugs.gentoo.org/920556 Signed-off-by: Matthias Maier <tamiko@gentoo.org>