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* sci-libs/gmsh: drop useless IUSE=luaMarek Szuba2020-12-201-2/+1
| | | | | | | | | | | | No mention of "Lua" anywhere in the source tarball, builds exactly the same way regardless of the value of this USE flag as well as regardless of whether or not Lua is present on the build system (unsurprising given the above), and according to http://www.geuz.org/pipermail/gmsh/2011/006218.html gmsh Lua bindings got deprecated by Python ones almost a decade ago. Bug: https://bugs.gentoo.org/752837 Signed-off-by: Marek Szuba <marecki@gentoo.org>
* sci-libs/p4est: migrate to lua-single.eclassMarek Szuba2020-12-202-6/+129
| | | | | | | | | | | | | | Both the latest release and the live ebuild. Doesn't do any Lua detection by itself, relies on libsc configuration instead. Therefore, the same compatibility as respective libsc versions. Status: - 2.2-r100 builds, tests and installs fine - 9999 untested due to build failures in sci-libs/libsc-9999 Closes: https://bugs.gentoo.org/752846 Signed-off-by: Marek Szuba <marecki@gentoo.org>
* sci-libs/libsc: migrate to lua-single.eclassMarek Szuba2020-12-204-8/+225
| | | | | | | | | | | | | | | | Both the latest release and the live ebuild. Compatibility as per upstream build scripts. Uses a weird home-grown way of detecting Lua which makes implicit assumptions about paths used by Lua headers, I think I've managed to figure it out though. Status: - 2.2-r100 builds and installs fine but has one test (dmatrix) failing with a non-zero exit code, which test however has got nothing to do with Lua; - 9999 fails to build on an unrelated matter (upstream version-processing macros do not like "9999" appearing as version number). Closes: https://bugs.gentoo.org/752840 Signed-off-by: Marek Szuba <marecki@gentoo.org>
* sci-libs/libsc: limit unmigrated ebuilds to dev-lang/lua:0Marek Szuba2020-12-202-4/+4
| | | | Signed-off-by: Marek Szuba <marecki@gentoo.org>
* sci-libs/cartopy: Add python3_9 supportThomas Beierlein2020-12-191-1/+1
| | | | | Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Thomas Beierlein <tomjbe@gentoo.org>
* sci-libs/cartopy: Drop python3_6 supportThomas Beierlein2020-12-191-1/+1
| | | | | | | | As package depends on sci-libs/shapely which no longer provides support for python3_6 we drop it here too. Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Thomas Beierlein <tomjbe@gentoo.org>
* Revert "sci-libs/cartopy: Add python3_9 support and drop 3_6"Matt Turner2020-12-181-1/+1
| | | | | | | | This reverts commit be004dc155e56999bfbc34beadf96d565f17a171. This commit broke the tree for sci-visualization/pythonprop. Signed-off-by: Matt Turner <mattst88@gentoo.org>
* sci-libs/cartopy: Add python3_9 support and drop 3_6Thomas Beierlein2020-12-181-1/+1
| | | | | Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Thomas Beierlein <tomjbe@gentoo.org>
* sci-libs/volk: bumpRick Farina2020-12-182-3/+3
| | | | | | | properly set subslot Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Rick Farina <zerochaos@gentoo.org>
* sci-libs/pyshp: Drop oldThomas Beierlein2020-12-182-26/+0
| | | | | Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Thomas Beierlein <tomjbe@gentoo.org>
* sci-libs/geos: Aaron W. Swenson2020-12-181-1/+1
| | | | Signed-off-by: Aaron W. Swenson <titanofold@gentoo.org>
* sci-libs/geos: Aaron W. Swenson2020-12-182-13/+8
| | | | | | | | | Upstream mistakenly released rc1 as 3.9.0. So, we need a new Manifest entry to get the real 3.9.0. Additionally, did some minor cleanup of the ebuild itself. Signed-off-by: Aaron W. Swenson <titanofold@gentoo.org>
* sci-libs/geos: Upstream dropped ruby and python supportDaniel M. Weeks2020-12-181-8/+1
| | | | | | | | Bug: https://bugs.gentoo.org/759295 Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Daniel M. Weeks <dan@danweeks.net> Closes: https://github.com/gentoo/gentoo/pull/18619 Signed-off-by: Aaron W. Swenson <titanofold@gentoo.org>
* sci-libs/pyshp: Add python3_9 supportThomas Beierlein2020-12-161-1/+1
| | | | | Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Thomas Beierlein <tomjbe@gentoo.org>
* sci-libs/scikits_optimization: Remove last-rited pkgMichał Górny2020-12-163-43/+0
| | | | | Closes: https://bugs.gentoo.org/749297 Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/scikits_timeseries: Remove last-rited pkgMichał Górny2020-12-163-67/+0
| | | | | Closes: https://bugs.gentoo.org/749297 Signed-off-by: Michał Górny <mgorny@gentoo.org>
* */*: limit pkgs not migrated to lua eclasses to dev-lang/lua:0Marek Szuba2020-12-153-3/+3
| | | | | | | | | | | Only ebuilds which previously were happy with any slot (those which explicitly specify one of the 5.x slots are allowed to keep doing so until they have been migrated to the eclasses) and which do not require a version of Lua higher than 5.1 (to prevent CI from complaining about non-existent dependencies; all of these should have been masked or USE-masked by now anyway). Signed-off-by: Marek Szuba <marecki@gentoo.org>
* sci-libs/adolc: Remove oldDavid Seifert2020-12-154-120/+0
| | | | | Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/adolc: Remove USE="static-libs"David Seifert2020-12-152-13/+14
| | | | | Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/colpack: Remove USE="static-libs"David Seifert2020-12-151-14/+11
| | | | | Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/gdal: Fix 3.2.0 configure options and subslotDaniel M. Weeks2020-12-151-2/+1
| | | | | | | | | | | | * SDE was dropped by upstream for 3.2.0. * SONAME changed from 3.0.0 to 3.2.0 Closes: https://bugs.gentoo.org/759340 Closes: https://bugs.gentoo.org/759538 Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Daniel M. Weeks <dan@danweeks.net> Closes: https://github.com/gentoo/gentoo/pull/18621 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/vtk: further >=dev-libs/pugixml-1.11 fixesSam James2020-12-152-8/+11
| | | | | | | | | | | | | | | * Drop the internal copy of pugixml just in case. * Adapt vtk to the new "proper" CMake config files from pugixml upstream. Note that Aisha Tammy's patch worked for her with CMake 3.19.1 but not for me on 3.17.4 (stable), so this seems to be needed to be safe. Bug: https://bugs.gentoo.org/758611 Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/vtk: fix finding pugixmlAisha Tammy2020-12-152-0/+360
| | | | | | | | Closes: https://bugs.gentoo.org/758611 Package-Manager: Portage-3.0.11, Repoman-3.0.2 Signed-off-by: Aisha Tammy <gentoo@aisha.cc> Closes: https://github.com/gentoo/gentoo/pull/18640 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/cddlib: make MY_PV assignment more reliable.Michael Orlitzky2020-12-141-3/+4
| | | | | | | | | | | François Bissey came up with a better way (using bash substrings) to compute MY_PV from PV in these ebuilds. It won't work forever, but it should be OK for a few more versions, and the failure mode is nicer than the present one of silently downloading the wrong version. Bug: https://bugs.gentoo.org/759520 Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/fftw: Sync live ebuildDavid Seifert2020-12-141-18/+15
| | | | | Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/fftw: Version bump to 3.3.9David Seifert2020-12-142-0/+184
| | | | | | | Bug: https://bugs.gentoo.org/694088 Closes: https://bugs.gentoo.org/759970 Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/nlopt: arm64 keyworded (bug #757849)Sam James2020-12-141-1/+1
| | | | | Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libigl: new ebuildDennis Lamm2020-12-133-0/+69
| | | | | | Signed-off-by: Dennis Lamm <expeditioneer@gentoo.org> Closes: https://github.com/gentoo/gentoo/pull/18638 Signed-off-by: Dennis Lamm <expeditioneer@gentoo.org>
* sci-libs/fftw: s390 keyworded (bug #759745)Sam James2020-12-131-1/+1
| | | | | Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hypre: ppc keyworded (bug #757822)Sam James2020-12-121-1/+1
| | | | | Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/sundials: ppc keyworded (bug #757822)Sam James2020-12-121-1/+1
| | | | | Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hypre: ppc64 keyworded (bug #757822)Sam James2020-12-121-1/+1
| | | | | Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/sundials: ppc64 keyworded (bug #757822)Sam James2020-12-121-1/+1
| | | | | Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/cddlib: new 094m revision to install the correct version.Michael Orlitzky2020-12-122-1/+2
| | | | | | | | | | There's an internal variable in this ebuild that needs to be updated for every new version... and wasn't. Thanks to Jouni Kosonen who noticed the mistake. Closes: https://bugs.gentoo.org/759520 Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/taucs: Remove support for dev-lang/cilkDavid Seifert2020-12-113-58/+26
| | | | | Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/votca-tools: version bump to v1.6.3Christoph Junghans2020-12-102-0/+45
| | | | | Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Christoph Junghans <junghans@gentoo.org>
* sci-libs/htslib: Remove old 1.9David Seifert2020-12-102-46/+0
| | | | | | | Closes: https://bugs.gentoo.org/725270 Closes: https://github.com/gentoo/gentoo/pull/18592 Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/mkl-rt: Remove last-rited pkgMichał Górny2020-12-103-111/+0
| | | | | Closes: https://bugs.gentoo.org/747310 Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/gdal: BumpPatrick Lauer2020-12-102-0/+302
| | | | | Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Patrick Lauer <patrick@gentoo.org>
* sci-libs/cddlib: new upstream version 0.94m.Michael Orlitzky2020-12-091-0/+53
| | | | | | | | | | | | This version moves the header files to a soon-to-be-standard location (so that Debian, Fedora, et cetera don't all have to move them) and is going to break some consumers as a result. For that reason, I opted not to package the previous version right away. This version, however, contains a critical bug fix as well. So users need the option to upgrade. Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/geos: BumpPatrick Lauer2020-12-092-0/+53
| | | | | Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Patrick Lauer <patrick@gentoo.org>
* sci-libs/proj: BumpPatrick Lauer2020-12-092-0/+54
| | | | | Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Patrick Lauer <patrick@gentoo.org>
* sci-libs/fplll: pkgconfig is needed when using qdFrançois Bissey2020-12-081-1/+1
| | | | | | Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: François René Pierre Bissey <frp.bissey@gmail.com> Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/fplll: new upstream release. Enable qd.François Bissey2020-12-083-0/+34
| | | | | Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/superlu_mt: arm64 keyworded (bug #757822)Sam James2020-12-071-1/+1
| | | | | Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hypre: arm64 keyworded (bug #757822)Sam James2020-12-071-1/+1
| | | | | Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/sundials: arm64 keyworded (bug #757822)Sam James2020-12-071-1/+1
| | | | | Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/btf: Keyword 1.2.6 arm, #757822Sam James2020-12-071-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/superlu_mt: Keyword 3.1 arm, #757822Sam James2020-12-071-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/klu: Keyword 1.3.9 arm, #757822Sam James2020-12-071-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>