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* sci-mathematics/why3-for-spark: fix broken linksAlfredo Tupone2020-06-151-2/+4
| | | | | | Closes: https://bugs.gentoo.org/728334 Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-mathematics/why3-for-spark: fix broken symlinkAlfredo Tupone2020-06-141-1/+1
| | | | | | Closes: https://bugs.gentoo.org/728176 Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-mathematics/why3-for-spark: fix flags and compressionAlfredo Tupone2020-06-122-0/+144
| | | | | | | Closes: https://bugs.gentoo.org/728032 Closes: https://bugs.gentoo.org/728050 Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-mathematics/maxima: bump to 5.44.0Andrey Grozin2020-06-082-0/+208
| | | | | Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Andrey Grozin <grozin@gentoo.org>
* sci-mathematics/z3: Port to cmake.eclassMichał Górny2020-06-081-2/+3
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-mathematics/octave: Drop 4* and 5.1.0Andreas Sturmlechner2020-06-0415-1058/+0
| | | | | Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-mathematics/octave: x86 stable wrt bug #709830Agostino Sarubbo2020-06-041-1/+1
| | | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-mathematics/why3-for-spark: use CCAlfredo Tupone2020-05-271-0/+10
| | | | | | Closes: https://bugs.gentoo.org/725598 Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-mathematics/psmt2-frontend: ignore CFLAGS warningAlfredo Tupone2020-05-271-1/+10
| | | | | | Closes: https://bugs.gentoo.org/725556 Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-mathematics/alt-ergo: better fix for QA_FLAGS_IGNOREDAlfredo Tupone2020-05-271-4/+4
| | | | | | Closes: https://bugs.gentoo.org/725558 Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-mathematics/rw: disable static libs and delete libtool archives.Michael Orlitzky2020-05-261-0/+40
| | | | | | Closes: https://bugs.gentoo.org/725530 Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-mathematics/gimps: add RESTRICTs due to licensePPed722020-05-261-1/+2
| | | | | | | Closes: https://bugs.gentoo.org/725402 Signed-off-by: Paolo Pedroni <paolo.pedroni@iol.it> Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Ulrich Müller <ulm@gentoo.org>
* sci-mathematics/rkward: Drop 0.7.1Andreas Sturmlechner2020-05-262-50/+0
| | | | | Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-mathematics/rkward: 0.7.1b version bumpAndreas Sturmlechner2020-05-262-0/+50
| | | | | Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-mathematics/alt-ergo: fix QA_FLAGS_IGNOREDThomas Deutschmann2020-05-251-2/+2
| | | | | Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Thomas Deutschmann <whissi@gentoo.org>
* sci-mathematics/alt-ergo: fix dependencyAlfredo Tupone2020-05-251-1/+8
| | | | | | Closes: https://bugs.gentoo.org/716416 Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-mathematics/octave: amd64 stable wrt bug #709830Mikle Kolyada2020-05-251-1/+1
| | | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 RepoMan-Options: --include-arches="amd64" Signed-off-by: Mikle Kolyada <zlogene@gentoo.org>
* sci-mathematics/rstudio: Bump to 1.3.959Mark Wright2020-05-258-0/+810
| | | | | Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Mark Wright <gienah@gentoo.org>
* sci-mathematics/rstudio: Fix build with R 4.0.0Mark Wright2020-05-243-0/+108
| | | | | | | | Thanks to Francois Valenduc for reporting. Closes: https://bugs.gentoo.org/722850 Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Mark Wright <gienah@gentoo.org>
* sci-mathematics/rstudio: Patch 1.2.5033 for boost 1.73.0Mark Wright2020-05-232-2/+1
| | | | | | | Remove redundant dodir. Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Mark Wright <gienah@gentoo.org>
* sci-mathematics/rstudio: Remove oldMark Wright2020-05-2320-2185/+0
| | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Mark Wright <gienah@gentoo.org>
* sci-mathematics/mathmod: EAPI-7, missing deps, fdo-mime--, xdg-utilsAndreas Sturmlechner2020-05-211-8/+14
| | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-mathematics/sympow: new package for symmetric power L-functions.Michael Orlitzky2020-05-175-0/+168
| | | | | | | | | | | | This is an actively-maintained fork of Mark Watkins's original sympow package (that is now impossible to find) by Debian's Jérôme Benoit. Sympow is a dependency of SageMath, and SageMath will soon be able to use the system's copy of sympow. Having this in Gentoo therefore avoids pointless rebuilds of sympow for Gentoo users of SageMath. Closes: https://bugs.gentoo.org/230449 Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-mathematics/agda-stdlib: update homepageAlexey Sokolov2020-05-172-4/+4
| | | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Alexey Sokolov <sokolov@google.com> Signed-off-by: Aaron Bauman <bman@gentoo.org>
* sci-mathematics/agda-lib-ffi: update homepageAlexey Sokolov2020-05-172-5/+5
| | | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Alexey Sokolov <sokolov@google.com> Signed-off-by: Aaron Bauman <bman@gentoo.org>
* sci-mathematics/agda: update homepageAlexey Sokolov2020-05-173-6/+6
| | | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Alexey Sokolov <sokolov@google.com> Signed-off-by: Aaron Bauman <bman@gentoo.org>
* sci-mathematics/wxmaxima: bump to 20.04.0Andrey Grozin2020-05-172-0/+50
| | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Andrey Grozin <grozin@gentoo.org>
* sci-mathematics/pymc3: Remove unused dep on (re)commonmarkMichał Górny2020-05-141-2/+0
| | | | | | A quick grep suggests that (re)commonmark is used only for doc building. Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-mathematics/z3: Remove redundant longdescMichał Górny2020-05-141-3/+0
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-mathematics/z3: Bump to 4.8.8Michał Górny2020-05-142-0/+96
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-mathematics/petsc: version bump to 3.13.1Matthias Maier2020-05-102-0/+190
| | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-mathematics/slepc: version bump to 3.13.1; remove oldMatthias Maier2020-04-293-88/+6
| | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-mathematics/petsc: drop oldMatthias Maier2020-04-296-529/+0
| | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-mathematics/petsc: version bump to 13.0Matthias Maier2020-04-295-0/+332
| | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-mathematics/pari: replace DOCS array.Michael Orlitzky2020-04-281-0/+1
| | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-mathematics/rstudio: Bump to 1.2.5042Mark Wright2020-04-283-0/+259
| | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Mark Wright <gienah@gentoo.org>
* sci-mathematics/pari: remove DOCS array, works fine withoutJoonas Niilola2020-04-261-2/+0
| | | | Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-mathematics/pari: move DOCS array to its correct placeJoonas Niilola2020-04-261-1/+2
| | | | Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-mathematics/pari: superceded by new releaseFrançois Bissey2020-04-263-162/+0
| | | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: François René Pierre Bissey <frp.bissey@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/15441 Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-mathematics/pari: New upstream releaseFrançois Bissey2020-04-262-0/+112
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: François René Pierre Bissey <frp.bissey@gmail.com> Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-mathematics/dunshire: new revision supporting python-3.{7,8}.Michael Orlitzky2020-04-191-5/+12
| | | | | | | | Updated to EAPI=7 and added a missing dependency while I was at it. Closes: https://bugs.gentoo.org/718502 Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-mathematics/flintqs: amd64 stable wrt bug #717958Agostino Sarubbo2020-04-191-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-mathematics/flintqs: x86 stable wrt bug #717958Agostino Sarubbo2020-04-191-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-mathematics/flintqs: fix the test suite.Michael Orlitzky2020-04-181-1/+1
| | | | | | | | | | I accidentally tested the installed version of QuadraticSieve (which may not exist) instead of the one we just built. Thanks to François Bissey who figured out what I did wrong. Closes: https://bugs.gentoo.org/718006 Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-mathematics/pari: new release + upstream patchFrançois Bissey2020-04-173-0/+162
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: François René Pierre Bissey <frp.bissey@gmail.com> Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-mathematics/gfan: disable test that hangs on x86.Michael Orlitzky2020-04-151-0/+11
| | | | | | | | | | The "0602ResultantFanProjection" test hangs on x86, leading to a build failure. Disabling this test looks as simple as deleting it from the source tree, which the ebuild now does in src_prepare(). Bug: https://bugs.gentoo.org/717112 Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-mathematics/gfan: remove old "unused" version and patches.Michael Orlitzky2020-04-136-243/+0
| | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-mathematics/glpk: remove old "unused" version and files.Michael Orlitzky2020-04-133-158/+0
| | | | | | Closes: https://bugs.gentoo.org/666060 Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-mathematics/glpk: x86 stable wrt bug #717072Agostino Sarubbo2020-04-131-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-mathematics/glpk: amd64 stable wrt bug #717072Agostino Sarubbo2020-04-131-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>