# Copyright 1999-2017 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # @ECLASS: emboss-r2.eclass # @MAINTAINER: # sci-biology@gentoo.org # jlec@gentoo.org # ted.tanberry@gmail.com # @AUTHOR: # Original author: Author Olivier Fisette <ofisette@gmail.com> # Next gen author: Justin Lecher <jlec@gentoo.org> # Next gen author: Ted Tanberry <ted.tanberry@gmail.com> # @BLURB: Use this to easy install EMBOSS and EMBASSY programs (EMBOSS add-ons). # @DESCRIPTION: # The inheriting ebuild must set at least EAPI=6 and provide EBO_DESCRIPTION before the inherit line. # KEYWORDS should be set. Additionally "(R|P)DEPEND"encies and other standard # ebuild variables can be extended (FOO+=" bar"). # # Example: # # EAPI=6 # # EBO_DESCRIPTION="applications from the CBS group" # # inherit emboss-r2 # @ECLASS-VARIABLE: EBO_DESCRIPTION # @DEFAULT_UNSET # @DESCRIPTION: # Should be set. Completes the generic description of the embassy module as follows: # # EMBOSS integrated version of ${EBO_DESCRIPTION}, e.g. # # "EMBOSS integrated version of applications from the CBS group" # # Defaults to the upstream name of the module. if [[ ! ${_EMBOSS_R2} ]]; then case ${EAPI:-0} in 6) ;; *) die "EAPI=${EAPI} is not supported" ;; esac inherit autotools flag-o-matic EXPORT_FUNCTIONS src_prepare src_configure src_install HOMEPAGE="http://emboss.sourceforge.net/" LICENSE="LGPL-2 GPL-2" SLOT="0" IUSE="mysql pdf png postgres static-libs X" RDEPEND=" dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt )" if [[ ${PN} == embassy-* ]]; then EMBASSY_PACKAGE=yes # The EMBASSY package name, retrieved from the inheriting ebuild's name EN=${PN:8} # The full name and version of the EMBASSY package (excluding the Gentoo # revision number) EF="${EN^^}-${PV}" [[ ${EBO_DESCRIPTION} ]] || die "EBO_DESCRIPTION was not set before inheriting emboss-r2.eclass" DESCRIPTION="EMBOSS integrated version of ${EBO_DESCRIPTION}" SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/${EF}.tar.gz -> embassy-${EN}-${PV}.tar.gz" RDEPEND+=" >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]" S="${WORKDIR}/${EF}" fi DEPEND="${RDEPEND}" # @ECLASS-VARIABLE: EBO_EAUTORECONF # @DEFAULT_UNSET # @DESCRIPTION: # If set, run eautoreconf from autotools.eclass after applying patches # in emboss-r2_src_prepare. # @FUNCTION: emboss-r2_src_prepare # @DESCRIPTION: # Does the following things # # 1. Renames configure.in to configure.ac, if possible # 2. Calls default_src_prepare (i.e. # applies Gentoo and user patches in EAPI>=6) # 3. If EBO_EAUTORECONF is set, run eautoreconf # emboss-r2_src_prepare() { if [[ -e configure.in ]]; then mv configure.{in,ac} || die fi default [[ ${EBO_EAUTORECONF} ]] && eautoreconf } # @FUNCTION: emboss-r2_src_configure # @DESCRIPTION: # runs econf with following options. # # --enable-shared # $(use_enable static-libs static) # $(use_with X x) # $(use_with png pngdriver) # $(use_with pdf hpdf) # $(use_with mysql mysql) # $(use_with postgres postgresql) # --enable-large # --without-java # --enable-systemlibs # # can be appended to like econf, e.g. # emboss-r2_src_configure --disable-shared emboss-r2_src_configure() { local myconf=( --enable-shared $(use_enable static-libs static) $(use_with X x) $(use_with png pngdriver "${EPREFIX}/usr") $(use_with pdf hpdf "${EPREFIX}/usr") $(use_with mysql mysql "${EPREFIX}/usr/bin/mysql_config") $(use_with postgres postgresql "${EPREFIX}/usr/bin/pg_config") --enable-large --without-java --enable-systemlibs ) [[ ${EMBASSY_PACKAGE} == yes ]] && \ append-cppflags "-I${EPREFIX}/usr/include/emboss" econf "${myconf[@]}" "$@" } # @FUNCTION: emboss-r2_src_install # @DESCRIPTION: # Installs the package into the staging area and removes # extraneous .la files, if USE="-static-libs" emboss-r2_src_install() { default # delete .la files if ! use static-libs; then find "${D}" -name '*.la' -delete || die fi } _EMBOSS_R2=1 fi