Added missing header files for BioPerl, backported fix to 1.8 branch (fixes bug #145562, see also bug #120446)

(Portage version: 2.1.1)

6 files changed, 69 insertions, 1 deletions

diff --git a/sci-libs/io_lib/ChangeLog b/sci-libs/io_lib/ChangeLog
index 8ff4a44c2111..b6a4bcb5b3ec 100644
--- a/sci-libs/io_lib/ChangeLog
+++ b/sci-libs/io_lib/ChangeLog
@@ -1,6 +1,17 @@
 # ChangeLog for sci-libs/io_lib
 # Copyright 1999-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/io_lib/ChangeLog,v 1.5 2006/09/12 05:00:19 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/io_lib/ChangeLog,v 1.6 2006/09/30 02:41:07 ribosome Exp $
+
+*io_lib-1.9.0-r1 (30 Sep 2006)
+*io_lib-1.8.12b-r1 (30 Sep 2006)
+
+  30 Sep 2006; Olivier Fisette <ribosome@gentoo.org>
+  +io_lib-1.8.12b-r1.ebuild, -io_lib-1.9.0.ebuild, +io_lib-1.9.0-r1.ebuild:
+  Added missing header files for compatibility with BioPerl's Staden
+  extensions. Backporting fix to 1.8 branch since BioPerl development has not
+  caught up with newer io_lib versions. Thanks to Martin Mokrejs
+  <mmokrejs@ribosome.natur.cuni.cz> for his work (fixes bug #145562, see also
+  bug #120446).
 
 *io_lib-1.9.0 (12 Sep 2006)
 
diff --git a/sci-libs/io_lib/files/digest-io_lib-1.8.12b b/sci-libs/io_lib/files/digest-io_lib-1.8.12b
index 0057f2e64bcf..ac2f4df413ee 100644
--- a/sci-libs/io_lib/files/digest-io_lib-1.8.12b
+++ b/sci-libs/io_lib/files/digest-io_lib-1.8.12b
@@ -1 +1,3 @@
 MD5 6adbf846cd8dd691b0d2287b8a5a9ff1 io_lib-1.8.12b.tar.bz2 259252
+RMD160 45327d7094a24c3f1c1144f662239928b4ff0d22 io_lib-1.8.12b.tar.bz2 259252
+SHA256 230e4b58d30201057b7f0baf386d77addee6352e3481be2ecbe5415146ce05bc io_lib-1.8.12b.tar.bz2 259252
diff --git a/sci-libs/io_lib/files/digest-io_lib-1.8.12b-r1 b/sci-libs/io_lib/files/digest-io_lib-1.8.12b-r1
new file mode 100644
index 000000000000..ac2f4df413ee
--- /dev/null
+++ b/sci-libs/io_lib/files/digest-io_lib-1.8.12b-r1
@@ -0,0 +1,3 @@
+MD5 6adbf846cd8dd691b0d2287b8a5a9ff1 io_lib-1.8.12b.tar.bz2 259252
+RMD160 45327d7094a24c3f1c1144f662239928b4ff0d22 io_lib-1.8.12b.tar.bz2 259252
+SHA256 230e4b58d30201057b7f0baf386d77addee6352e3481be2ecbe5415146ce05bc io_lib-1.8.12b.tar.bz2 259252
diff --git a/sci-libs/io_lib/files/digest-io_lib-1.9.0-r1 b/sci-libs/io_lib/files/digest-io_lib-1.9.0-r1
new file mode 100644
index 000000000000..0bdd84e12a91
--- /dev/null
+++ b/sci-libs/io_lib/files/digest-io_lib-1.9.0-r1
@@ -0,0 +1,3 @@
+MD5 9324dc5a3f44895175b3bc2f0bc045d0 io_lib-1.9.0.tar.bz2 256883
+RMD160 c90abf6466ce1bf8b9bd59ce1401c88a83b2aaad io_lib-1.9.0.tar.bz2 256883
+SHA256 99848f286967e9e1cb123c2b607332edb766f7290c5b93fb87fe58a39b9dddaa io_lib-1.9.0.tar.bz2 256883
diff --git a/sci-libs/io_lib/io_lib-1.8.12b-r1.ebuild b/sci-libs/io_lib/io_lib-1.8.12b-r1.ebuild
new file mode 100644
index 000000000000..5de049255c3f
--- /dev/null
+++ b/sci-libs/io_lib/io_lib-1.8.12b-r1.ebuild
@@ -0,0 +1,23 @@
+# Copyright 1999-2006 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/io_lib/io_lib-1.8.12b-r1.ebuild,v 1.1 2006/09/30 02:41:07 ribosome Exp $
+
+DESCRIPTION="A general purpose trace and experiment file reading/writing interface"
+HOMEPAGE="http://staden.sourceforge.net/"
+SRC_URI="mirror://sourceforge/staden/${P}.tar.bz2"
+LICENSE="staden"
+
+SLOT="0"
+KEYWORDS="~amd64 ~ppc ~x86"
+IUSE=""
+
+S="${WORKDIR}/${PN}-1.8.12"
+
+src_install() {
+	make install DESTDIR="${D}" || die
+
+	insinto /usr/include/${PN}
+	doins "${S}"/{config,os}.h || die "Failed to install config.h header"
+
+	dodoc CHANGES README || die "Failed to install documentation."
+}
diff --git a/sci-libs/io_lib/io_lib-1.9.0-r1.ebuild b/sci-libs/io_lib/io_lib-1.9.0-r1.ebuild
new file mode 100644
index 000000000000..f509e3afa5ef
--- /dev/null
+++ b/sci-libs/io_lib/io_lib-1.9.0-r1.ebuild
@@ -0,0 +1,26 @@
+# Copyright 1999-2006 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/io_lib/io_lib-1.9.0-r1.ebuild,v 1.1 2006/09/30 02:41:07 ribosome Exp $
+
+DESCRIPTION="A general purpose trace and experiment file reading/writing interface"
+HOMEPAGE="http://staden.sourceforge.net/"
+SRC_URI="mirror://sourceforge/staden/${P}.tar.bz2"
+LICENSE="staden"
+
+SLOT="0"
+KEYWORDS="~amd64 ~ppc ~x86"
+IUSE=""
+
+# Prototype changes in io_lib-1.9.0 create incompatibilities with BioPerl. (Only
+# versions 1.8.11 and 1.8.12 will work with the BioPerl Staden extensions.)
+DEPEND="!sci-biology/bioperl"
+RDEPEND="${DEPEND}"
+
+src_install() {
+	make install DESTDIR="${D}" || die
+
+	insinto /usr/include/${PN}
+	doins "${S}"/config.h || die "Failed to install config.h header"
+
+	dodoc CHANGES README || die "Failed to install documentation."
+}