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authorStephen Diener <sediener@gentoo.org>2004-01-09 02:53:25 +0000
committerStephen Diener <sediener@gentoo.org>2004-01-09 02:53:25 +0000
commite9cf00306cd72dd675663f08d2f6b32ac56c3f35 (patch)
tree3723ad20ca117925477894087bad652fd100f917
parentversion bump new release (diff)
downloadgentoo-2-e9cf00306cd72dd675663f08d2f6b32ac56c3f35.tar.gz
gentoo-2-e9cf00306cd72dd675663f08d2f6b32ac56c3f35.tar.bz2
gentoo-2-e9cf00306cd72dd675663f08d2f6b32ac56c3f35.zip
version bump new release
-rw-r--r--app-sci/bioperl/ChangeLog7
-rw-r--r--app-sci/bioperl/Manifest4
-rw-r--r--app-sci/bioperl/bioperl-1.4.ebuild51
-rw-r--r--app-sci/bioperl/files/digest-bioperl-1.41
4 files changed, 60 insertions, 3 deletions
diff --git a/app-sci/bioperl/ChangeLog b/app-sci/bioperl/ChangeLog
index 826bc6f84ebf..804af3f2fe14 100644
--- a/app-sci/bioperl/ChangeLog
+++ b/app-sci/bioperl/ChangeLog
@@ -1,6 +1,11 @@
# ChangeLog for app-sci/bioperl
# Copyright 2002-2003 Gentoo Technologies, Inc.; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/bioperl/ChangeLog,v 1.7 2003/11/24 20:48:06 sediener Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-sci/bioperl/ChangeLog,v 1.8 2004/01/09 02:53:08 sediener Exp $
+
+*bioperl-1.4 (08 Jan 2004)
+
+ 08 Jan 2004; Stephen Diener <sediener@gentoo.org> bioperl-1.4.ebuild:
+ version bump
24 Nov 2003; Stephen Diener <sediener@gentoo.org> bioperl-1.2.3.ebuild:
bump to stable.
diff --git a/app-sci/bioperl/Manifest b/app-sci/bioperl/Manifest
index e4490f630acb..b108a473501a 100644
--- a/app-sci/bioperl/Manifest
+++ b/app-sci/bioperl/Manifest
@@ -2,8 +2,8 @@ MD5 20616984167d7ac1a9db33713d70e93f bioperl-1.0.2.ebuild 1496
MD5 64c8b83ffe189aa1d5300210ee41f999 bioperl-1.2.3.ebuild 2082
MD5 ce01843f37edf576d07e2423ee6d486e bioperl-1.2.ebuild 1524
MD5 683bbc29b2f9f4f309efbecfea7184a1 bioperl-1.2.2.ebuild 2198
-MD5 91f77d74fd5f87b99f31b0733b9c9c3c bioperl-1.4.ebuild 1237
-MD5 61a74e4b80a1ab784b31f2d1e80079ff ChangeLog 1202
+MD5 8fe38f214ed28a3f60beec674edba02c bioperl-1.4.ebuild 1171
+MD5 d7b4ebc61a4bf0401f0da5e44b9a192e ChangeLog 1318
MD5 e8b4df3df76800c376905734d8043cfa metadata.xml 216
MD5 8f6c3beb108aaa2b78b0b4f8d218187a files/biodbgff-enable-1.2.2.patch 3355
MD5 1828ff2ba6225e17a98d27bfbad5c7c9 files/bioperl-1.2-manpage.diff 712
diff --git a/app-sci/bioperl/bioperl-1.4.ebuild b/app-sci/bioperl/bioperl-1.4.ebuild
new file mode 100644
index 000000000000..ec3c46c88a7c
--- /dev/null
+++ b/app-sci/bioperl/bioperl-1.4.ebuild
@@ -0,0 +1,51 @@
+# Copyright 1999-2004 Gentoo Technologies, Inc.
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/app-sci/bioperl/bioperl-1.4.ebuild,v 1.1 2004/01/09 02:53:08 sediener Exp $
+
+inherit perl-module eutils
+
+CATEGORY="app-sci"
+
+DESCRIPTION="collection of tools for bioinformatics, genomics and life science research"
+HOMEPAGE="http://www.bioperl.org/"
+SRC_URI="http://www.bioperl.org/ftp/DIST/${P}.tar.bz2"
+
+LICENSE="Artistic GPL-2"
+SLOT="0"
+KEYWORDS="~x86"
+IUSE="mysql gd"
+
+DEPEND="
+ dev-perl/File-Temp
+ dev-perl/HTML-Parser
+ dev-perl/IO-String
+ dev-perl/IO-stringy
+ dev-perl/SOAP-Lite
+ dev-perl/Storable
+ dev-perl/XML-DOM
+ dev-perl/XML-Parser
+ dev-perl/XML-Writer
+ dev-perl/XML-Twig
+ dev-perl/libxml-perl
+ dev-perl/libwww-perl
+ dev-perl/Graph
+ dev-perl/Text-Shellwords
+ gd? (
+ >=dev-perl/GD-1.32-r1
+ dev-perl/SVG
+ dev-perl/GD-SVG
+ )
+ mysql? ( >=dev-perl/DBD-mysql-2.1004-r3 )"
+
+RDEPEND="${DEPEND}"
+
+src_compile() {
+ yes "" | perl Makefile.PL ${myconf} \
+ PREFIX=${D}/usr INSTALLDIRS=vendor
+ perl-module_src_test || die "Test Failed"
+}
+
+src_install() {
+ mydoc="AUTHORS BUGS FAQ"
+ perl-module_src_install
+}
diff --git a/app-sci/bioperl/files/digest-bioperl-1.4 b/app-sci/bioperl/files/digest-bioperl-1.4
new file mode 100644
index 000000000000..43354ceffe03
--- /dev/null
+++ b/app-sci/bioperl/files/digest-bioperl-1.4
@@ -0,0 +1 @@
+MD5 c49922bb58699cf42765056da8944f6e bioperl-1.4.tar.bz2 4224508