diff options
| author |   Andrey Kislyuk <weaver@gentoo.org> | 2012-02-25 17:46:03 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2012-02-25 17:46:03 +0000 |
| commit | 6601536f0cb4b4076ad02589eb9aea6791766a63 (patch) | |
| tree | 42ac0b9046373f84e4973f1b1143b85130f14001 /sci-biology/bamtools | |
| parent | Stable on alpha, bug #400053 (diff) | |
| download | gentoo-2-6601536f0cb4b4076ad02589eb9aea6791766a63.tar.gz gentoo-2-6601536f0cb4b4076ad02589eb9aea6791766a63.tar.bz2 gentoo-2-6601536f0cb4b4076ad02589eb9aea6791766a63.zip | |
Import from Science overlay
(Portage version: 2.2.0_alpha74/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology/bamtools')
| -rw-r--r-- | sci-biology/bamtools/ChangeLog | 24 | ||||
| -rw-r--r-- | sci-biology/bamtools/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/bamtools/bamtools-1.0.2.ebuild | 33 | ||||
| -rw-r--r-- | sci-biology/bamtools/metadata.xml | 14 |
4 files changed, 75 insertions, 0 deletions
diff --git a/sci-biology/bamtools/ChangeLog b/sci-biology/bamtools/ChangeLog new file mode 100644 index 000000000000..83257ba67c99 --- /dev/null +++ b/sci-biology/bamtools/ChangeLog @@ -0,0 +1,24 @@ +# ChangeLog for sci-biology/bamtools +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bamtools/ChangeLog,v 1.1 2012/02/25 17:46:03 weaver Exp $ + + 25 Feb 2012; Andrey Kislyuk <weaver@gentoo.org> +bamtools-1.0.2.ebuild, + +metadata.xml: + Import from Science overlay + +*bamtools-1.0.2 (10 Sep 2011) + + 10 Sep 2011; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> + +bamtools-1.0.2.ebuild, bamtools-9999.ebuild, -bamtools-20101215.ebuild, + metadata.xml: + moved to new release download link and version bump, documented that included + JsonCPP is a modified version bamtools-20101215.ebuild bamtools-1.0.2.ebuild + bamtools-9999.ebuild + + 08 Sep 2011; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> + bamtools-9999.ebuild, bamtools-20101215.ebuild: + Point to current HOMEPAGE bamtools-20101215.ebuild bamtools-9999.ebuild + + 24 Jun 2011; Justin Lecher <jlec@gentoo.org> bamtools-9999.ebuild: + Moved from 'git' to 'git-2' + diff --git a/sci-biology/bamtools/Manifest b/sci-biology/bamtools/Manifest new file mode 100644 index 000000000000..544894864a53 --- /dev/null +++ b/sci-biology/bamtools/Manifest @@ -0,0 +1,4 @@ +DIST bamtools-1.0.2.tar.gz 207523 RMD160 ba737ad591c69d9110138dc066b9c2133ef77bb4 SHA1 70d4a1f8d7da73dd381b609b618ed19b6184366e SHA256 d3ca75d2bec531f15dbc400a76afbe48d47452ce05552c88943bbce81a0862d8 +EBUILD bamtools-1.0.2.ebuild 842 RMD160 f3722f608e05b45ded4aeca3a4c7f4774adbc858 SHA1 fe014530b14726623f96e1369a83784a2b978681 SHA256 13a86796a0671aafb792787da2ccfb97272de1ade5e3b01f7fcf204162c47382 +MISC ChangeLog 893 RMD160 945742d2c90276b2b8d532487cc9af22a886f85f SHA1 635926eee72cd4ec09407dfac384a940292b28f1 SHA256 94f785c080202fddbdce9b1d5acf7da39f9cf6bebae23a494a49749f37c8d01f +MISC metadata.xml 649 RMD160 8a5dce94c7b1d2c3d4a65514ab4596575d10fdb7 SHA1 9340ab0bbe312b008e3084a2fe640ea3fb28ecfe SHA256 ef2022465e51bcfb97cd3c02a93ce3c94826d059f444aacccc75c33281488f94 diff --git a/sci-biology/bamtools/bamtools-1.0.2.ebuild b/sci-biology/bamtools/bamtools-1.0.2.ebuild new file mode 100644 index 000000000000..7017a38a6e11 --- /dev/null +++ b/sci-biology/bamtools/bamtools-1.0.2.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bamtools/bamtools-1.0.2.ebuild,v 1.1 2012/02/25 17:46:03 weaver Exp $ + +EAPI=4 + +inherit cmake-utils + +DESCRIPTION="BamTools provides both a programmer's API and an end-user's toolkit for handling BAM files." +HOMEPAGE="https://github.com/pezmaster31/bamtools" +SRC_URI="https://github.com/downloads/pezmaster31/bamtools/"${P}".tar.gz" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +DEPEND="sys-libs/zlib" +RDEPEND="${DEPEND}" + +src_install() { + for i in bin/bamtools-${PV} lib/libbamtools.so.${PV} lib/libbamtools-utils.so.${PV}; do + TMPDIR="$(pwd)" scanelf -Xr $i || die + done + + dobin bin/bamtools || die + dolib lib/* || die + insinto /usr/include/bamtools/api || die + doins include/api/* || die + insinto /usr/include/bamtools/shared || die + doins include/shared/* + dodoc README || die +} diff --git a/sci-biology/bamtools/metadata.xml b/sci-biology/bamtools/metadata.xml new file mode 100644 index 000000000000..09f78c98d172 --- /dev/null +++ b/sci-biology/bamtools/metadata.xml @@ -0,0 +1,14 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <maintainer> + <email>mmokrejs@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <longdescription>BAM (Binary Alignment/Map) format is useful for storing large DNA sequence alignments. It is closely related to the text-based SAM format, but optimized for random-access. BamTools provides a fast, flexible C++ API for reading and writing BAM files.</longdescription> +</pkgmetadata> |