diff options
| author |   Olivier Fisette <ribosome@gentoo.org> | 2006-09-13 01:41:58 +0000 |
|---|---|---|
| committer | Olivier Fisette <ribosome@gentoo.org> | 2006-09-13 01:41:58 +0000 |
| commit | 607a95804f81914b1b90b911fea81e6a2a5d0448 (patch) | |
| tree | c1d21afb323bf88efa08a2d1e67a4a1897010343 /sci-biology/bioperl | |
| parent | Stable on x86, bug #144222. (diff) | |
| download | gentoo-2-607a95804f81914b1b90b911fea81e6a2a5d0448.tar.gz gentoo-2-607a95804f81914b1b90b911fea81e6a2a5d0448.tar.bz2 gentoo-2-607a95804f81914b1b90b911fea81e6a2a5d0448.zip | |
New upstream version
(Portage version: 2.1.1)
Diffstat (limited to 'sci-biology/bioperl')
| -rw-r--r-- | sci-biology/bioperl/ChangeLog | 9 | ||||
| -rw-r--r-- | sci-biology/bioperl/bioperl-1.5.1.ebuild | 52 | ||||
| -rw-r--r-- | sci-biology/bioperl/files/digest-bioperl-1.5.1 | 3 |
3 files changed, 63 insertions, 1 deletions
diff --git a/sci-biology/bioperl/ChangeLog b/sci-biology/bioperl/ChangeLog index 9c759516f987..cf54b1ed0d7d 100644 --- a/sci-biology/bioperl/ChangeLog +++ b/sci-biology/bioperl/ChangeLog @@ -1,6 +1,13 @@ # ChangeLog for sci-biology/bioperl # Copyright 2002-2006 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/ChangeLog,v 1.21 2006/08/18 02:21:58 mcummings Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/ChangeLog,v 1.22 2006/09/13 01:41:58 ribosome Exp $ + +*bioperl-1.5.1 (13 Sep 2006) + + 13 Sep 2006; Olivier Fisette <ribosome@gentoo.org> +bioperl-1.5.1.ebuild: + New upstream version. Thanks to Greg Wilson <gdw1@cornell.edu>, Martin + Mokrejs <mmokrejs@ribosome.natur.cuni.cz> and Neil Shephard + <nshephard@gmail.com> for their work (see bug #79459). 18 Aug 2006; Michael Cummings <mcummings@gentoo.org> bioperl-1.4.ebuild: Marking amd64 stable diff --git a/sci-biology/bioperl/bioperl-1.5.1.ebuild b/sci-biology/bioperl/bioperl-1.5.1.ebuild new file mode 100644 index 000000000000..1053a8daeeeb --- /dev/null +++ b/sci-biology/bioperl/bioperl-1.5.1.ebuild @@ -0,0 +1,52 @@ +# Copyright 1999-2006 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/bioperl-1.5.1.ebuild,v 1.1 2006/09/13 01:41:58 ribosome Exp $ + +inherit perl-module eutils + +CATEGORY="sci-biology" + +DESCRIPTION="collection of tools for bioinformatics, genomics and life science research" +HOMEPAGE="http://www.bioperl.org/" +SRC_URI="http://www.bioperl.org/DIST/${P}.tar.bz2" + +LICENSE="Artistic GPL-2" +SLOT="0" +KEYWORDS="~alpha ~amd64 ~ia64 ~ppc ~sparc ~x86" +IUSE="mysql gd" + +DEPEND=" + perl-core/File-Temp + dev-perl/HTML-Parser + dev-perl/IO-String + dev-perl/IO-stringy + dev-perl/SOAP-Lite + perl-core/Storable + dev-perl/XML-DOM + dev-perl/XML-Parser + dev-perl/XML-Writer + dev-perl/XML-Twig + dev-perl/libxml-perl + dev-perl/libwww-perl + dev-perl/Graph + dev-perl/Text-Shellwords + gd? ( + >=dev-perl/GD-1.32-r1 + dev-perl/SVG + dev-perl/GD-SVG + ) + mysql? ( >=dev-perl/DBD-mysql-2.1004-r3 )" + +src_compile() { + yes "" | perl Makefile.PL ${myconf} \ + PREFIX=${D}/usr INSTALLDIRS=vendor +} + +src_test() { + perl-module_src_test || die "Test failed" +} + +src_install() { + mydoc="AUTHORS BUGS FAQ" + perl-module_src_install +} diff --git a/sci-biology/bioperl/files/digest-bioperl-1.5.1 b/sci-biology/bioperl/files/digest-bioperl-1.5.1 new file mode 100644 index 000000000000..299158ff7ff2 --- /dev/null +++ b/sci-biology/bioperl/files/digest-bioperl-1.5.1 @@ -0,0 +1,3 @@ +MD5 ba24f59a00c9919840a9b58f7fbd4d94 bioperl-1.5.1.tar.bz2 5538613 +RMD160 422bdd0dc17dd246ec1fc3ae6fe020705111892d bioperl-1.5.1.tar.bz2 5538613 +SHA256 696c8bd162bc79fa3c75eeb63bb42f8cbcbb4b72de4dcb3bec7ea7a293506f6c bioperl-1.5.1.tar.bz2 5538613 |