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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2009-07-27 20:25:54 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-07-27 20:25:54 +0000 |
| commit | 0a2050c7803a0820fbbf7683a7802dfb8ebeacb3 (patch) | |
| tree | 9350eac19c17a252d98f131bd8ba79eba00e3a00 /sci-biology/bowtie | |
| parent | Add missing flex dependency. (diff) | |
| download | gentoo-2-0a2050c7803a0820fbbf7683a7802dfb8ebeacb3.tar.gz gentoo-2-0a2050c7803a0820fbbf7683a7802dfb8ebeacb3.tar.bz2 gentoo-2-0a2050c7803a0820fbbf7683a7802dfb8ebeacb3.zip | |
Version bump
(Portage version: 2.2_rc30/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology/bowtie')
| -rw-r--r-- | sci-biology/bowtie/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/bowtie/bowtie-0.10.1.ebuild | 30 |
2 files changed, 36 insertions, 1 deletions
diff --git a/sci-biology/bowtie/ChangeLog b/sci-biology/bowtie/ChangeLog index b2af845d92c5..be4ceaa24114 100644 --- a/sci-biology/bowtie/ChangeLog +++ b/sci-biology/bowtie/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/bowtie # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/ChangeLog,v 1.4 2009/06/21 15:15:43 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/ChangeLog,v 1.5 2009/07/27 20:25:54 weaver Exp $ + +*bowtie-0.10.1 (27 Jul 2009) + + 27 Jul 2009; Andrey Kislyuk <weaver@gentoo.org> +bowtie-0.10.1.ebuild: + Version bump *bowtie-0.10.0 (21 Jun 2009) diff --git a/sci-biology/bowtie/bowtie-0.10.1.ebuild b/sci-biology/bowtie/bowtie-0.10.1.ebuild new file mode 100644 index 000000000000..80d3c5abfc98 --- /dev/null +++ b/sci-biology/bowtie/bowtie-0.10.1.ebuild @@ -0,0 +1,30 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/bowtie-0.10.1.ebuild,v 1.1 2009/07/27 20:25:54 weaver Exp $ + +EAPI="2" + +DESCRIPTION="An ultrafast memory-efficient short read aligner" +HOMEPAGE="http://bowtie-bio.sourceforge.net/" +SRC_URI="mirror://sourceforge/bowtie-bio/${P}-src.zip" + +LICENSE="Artistic" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86" + +DEPEND="app-arch/unzip" +RDEPEND="" + +# NB: Bundles code from Maq (http://maq.sf.net) and the SeqAn library (http://www.seqan.de) +# TODO: properly report system CFLAGS in -DCOMPILE_OPTIONS + +src_prepare() { + sed -i 's/$(CXX) $(RELEASE_FLAGS)/$(CXX) $(CXXFLAGS) $(RELEASE_FLAGS)/' "${S}/Makefile" || die +} + +src_install() { + dobin bowtie bowtie-* || die + newman MANUAL bowtie.1 + dodoc AUTHORS NEWS TUTORIAL +} |