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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2009-03-16 04:36:47 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-03-16 04:36:47 +0000 |
| commit | da28a9d0d4a8886799381740c15647602eb0c79d (patch) | |
| tree | 2cb801a946c7092c0c6a86e97417cfbdcdd7151e /sci-biology/bowtie | |
| parent | fix typo (diff) | |
| download | gentoo-2-da28a9d0d4a8886799381740c15647602eb0c79d.tar.gz gentoo-2-da28a9d0d4a8886799381740c15647602eb0c79d.tar.bz2 gentoo-2-da28a9d0d4a8886799381740c15647602eb0c79d.zip | |
Import from Science overlay
(Portage version: 2.2_rc20/cvs/Linux 2.6.26-gentoo-r4 x86_64)
Diffstat (limited to 'sci-biology/bowtie')
| -rw-r--r-- | sci-biology/bowtie/ChangeLog | 13 | ||||
| -rw-r--r-- | sci-biology/bowtie/bowtie-0.9.9.1.ebuild | 28 | ||||
| -rw-r--r-- | sci-biology/bowtie/metadata.xml | 9 |
3 files changed, 50 insertions, 0 deletions
diff --git a/sci-biology/bowtie/ChangeLog b/sci-biology/bowtie/ChangeLog new file mode 100644 index 000000000000..d9b7cca16b7b --- /dev/null +++ b/sci-biology/bowtie/ChangeLog @@ -0,0 +1,13 @@ +# ChangeLog for sci-biology/bowtie +# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/ChangeLog,v 1.1 2009/03/16 04:36:47 weaver Exp $ + +*bowtie-0.9.9.1 (15 Mar 2009) + + 15 Mar 2009; Andrey Kislyuk <weaver@gentoo.org> +metadata.xml, + +bowtie-0.9.9.1.ebuild: + Import from Science overlay + + 27 Feb 2009; Andrey Kislyuk <weaver@gentoo.org> ChangeLog: + New package sci-biology/bowtie, ebuild written by me + diff --git a/sci-biology/bowtie/bowtie-0.9.9.1.ebuild b/sci-biology/bowtie/bowtie-0.9.9.1.ebuild new file mode 100644 index 000000000000..dfcd68bedc13 --- /dev/null +++ b/sci-biology/bowtie/bowtie-0.9.9.1.ebuild @@ -0,0 +1,28 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/bowtie-0.9.9.1.ebuild,v 1.1 2009/03/16 04:36:47 weaver Exp $ + +DESCRIPTION="An ultrafast memory-efficient short read aligner" +HOMEPAGE="http://bowtie-bio.sourceforge.net/" +SRC_URI="mirror://sourceforge/bowtie-bio/${P}-src.zip" + +LICENSE="Artistic" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86" + +DEPEND="app-arch/unzip" +RDEPEND="" + +# NB: Bundles code from Maq (http://maq.sf.net) and the SeqAn library (http://www.seqan.de) + +src_unpack() { + unpack ${A} + sed -i 's/$(CXX) $(RELEASE_FLAGS)/$(CXX) $(CXXFLAGS) $(RELEASE_FLAGS)/' "${S}/Makefile" || die +} + +src_install() { + dobin bowtie bowtie-* || die + newman MANUAL bowtie.1 + dodoc AUTHORS NEWS TUTORIAL +} diff --git a/sci-biology/bowtie/metadata.xml b/sci-biology/bowtie/metadata.xml new file mode 100644 index 000000000000..3302123e5718 --- /dev/null +++ b/sci-biology/bowtie/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <herd>sci-biology</herd> +</pkgmetadata> |