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authorJustin Lecher <jlec@gentoo.org>2015-03-29 09:35:00 +0000
committerJustin Lecher <jlec@gentoo.org>2015-03-29 09:35:00 +0000
commit7db5595227350682c0ff86e89dabfb03becb2d1f (patch)
tree208bd8204c3e9d41441cc0d0a097de6cf0c80b4c /sci-biology/cutg
parentMarked ~hppa (bug #544064). (diff)
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Drop old
(Portage version: 2.2.18/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
Diffstat (limited to 'sci-biology/cutg')
-rw-r--r--sci-biology/cutg/ChangeLog6
-rw-r--r--sci-biology/cutg/cutg-151.ebuild49
-rw-r--r--sci-biology/cutg/cutg-160.ebuild50
3 files changed, 5 insertions, 100 deletions
diff --git a/sci-biology/cutg/ChangeLog b/sci-biology/cutg/ChangeLog
index 6ec2a510fc9f..63ffdea51c0f 100644
--- a/sci-biology/cutg/ChangeLog
+++ b/sci-biology/cutg/ChangeLog
@@ -1,6 +1,10 @@
# ChangeLog for sci-biology/cutg
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/ChangeLog,v 1.61 2015/03/28 21:39:28 ago Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/ChangeLog,v 1.62 2015/03/29 09:35:00 jlec Exp $
+
+ 29 Mar 2015; Justin Lecher <jlec@gentoo.org> -cutg-151.ebuild,
+ -cutg-160.ebuild:
+ Drop old
28 Mar 2015; Agostino Sarubbo <ago@gentoo.org> cutg-160-r1.ebuild:
Stable for ppc, wrt bug #542246
diff --git a/sci-biology/cutg/cutg-151.ebuild b/sci-biology/cutg/cutg-151.ebuild
deleted file mode 100644
index 80c86e6f88fd..000000000000
--- a/sci-biology/cutg/cutg-151.ebuild
+++ /dev/null
@@ -1,49 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/cutg-151.ebuild,v 1.11 2011/08/09 15:36:16 xarthisius Exp $
-
-DESCRIPTION="Codon usage tables calculated from GenBank"
-HOMEPAGE="http://www.kazusa.or.jp/codon/"
-SRC_URI="ftp://ftp.kazusa.or.jp/pub/codon/current/compressed/CUTG.${PV}.tar.gz"
-
-SLOT="0"
-LICENSE="public-domain"
-# Minimal build keeps only the indexed files (if applicable) and the
-# documentation. The non-indexed database is not installed.
-IUSE="emboss minimal"
-KEYWORDS="amd64 ppc x86"
-
-DEPEND="emboss? ( sci-biology/emboss )"
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}"
-
-RESTRICT="binchecks strip"
-
-src_compile() {
- if use emboss; then
- mkdir CODONS
- echo
- einfo "Indexing CUTG for usage with EMBOSS."
- EMBOSS_DATA="." cutgextract -auto -directory "${S}" || die \
- "Indexing CUTG failed."
- echo
- fi
-}
-
-src_install() {
- if ! use minimal; then
- mkdir -p "${D}"usr/share/${PN}
- mv *.codon *.spsum "${D}"/usr/share/${PN} || die \
- "Installing raw CUTG database failed."
- fi
- dodoc README
- if use emboss; then
- mkdir -p "${D}"/usr/share/EMBOSS/data/CODONS
- cd CODONS
- for file in *; do
- mv ${file} "${D}"/usr/share/EMBOSS/data/CODONS || die \
- "Installing the EMBOSS-indexed database failed."
- done
- fi
-}
diff --git a/sci-biology/cutg/cutg-160.ebuild b/sci-biology/cutg/cutg-160.ebuild
deleted file mode 100644
index 7008d60b98fc..000000000000
--- a/sci-biology/cutg/cutg-160.ebuild
+++ /dev/null
@@ -1,50 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/cutg-160.ebuild,v 1.6 2011/08/09 15:36:16 xarthisius Exp $
-
-EAPI="3"
-
-DESCRIPTION="Codon usage tables calculated from GenBank"
-HOMEPAGE="http://www.kazusa.or.jp/codon/"
-SRC_URI="mirror://gentoo/${P}.tar.bz2"
-
-SLOT="0"
-LICENSE="public-domain"
-# Minimal build keeps only the indexed files (if applicable) and the
-# documentation. The non-indexed database is not installed.
-IUSE="emboss minimal"
-KEYWORDS="amd64 ~ppc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris"
-
-DEPEND="emboss? ( sci-biology/emboss )"
-RDEPEND="${DEPEND}"
-
-RESTRICT="binchecks strip"
-
-src_compile() {
- if use emboss; then
- mkdir CODONS
- echo
- einfo "Indexing CUTG for usage with EMBOSS."
- EMBOSS_DATA="." cutgextract -auto -directory "${S}" || die \
- "Indexing CUTG failed."
- echo
- fi
-}
-
-src_install() {
- if ! use minimal; then
- mkdir -p "${ED}"usr/share/${PN}
- mv *.codon *.spsum "${ED}"/usr/share/${PN} || die \
- "Installing raw CUTG database failed."
- fi
- dodoc README CODON_LABEL SPSUM_LABEL || die \
- "Failed to install documentation."
- if use emboss; then
- mkdir -p "${ED}"/usr/share/EMBOSS/data/CODONS
- cd CODONS
- for file in *; do
- mv ${file} "${ED}"/usr/share/EMBOSS/data/CODONS || die \
- "Installing the EMBOSS-indexed database failed."
- done
- fi
-}