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| author |   Olivier Fisette <ribosome@gentoo.org> | 2005-02-27 18:00:45 +0000 |
|---|---|---|
| committer | Olivier Fisette <ribosome@gentoo.org> | 2005-02-27 18:00:45 +0000 |
| commit | 8031e3f4b12e561fd52d678cc1ae3312d24a0cd0 (patch) | |
| tree | f63d9ae048df32208070de51e0264d3a605144b8 /sci-biology/cutg | |
| parent | repoman: Trim trailing whitespace (diff) | |
| download | gentoo-2-8031e3f4b12e561fd52d678cc1ae3312d24a0cd0.tar.gz gentoo-2-8031e3f4b12e561fd52d678cc1ae3312d24a0cd0.tar.bz2 gentoo-2-8031e3f4b12e561fd52d678cc1ae3312d24a0cd0.zip | |
New version.
(Portage version: 2.0.51.16)
Diffstat (limited to 'sci-biology/cutg')
| -rw-r--r-- | sci-biology/cutg/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/cutg/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/cutg/cutg-145.ebuild | 42 | ||||
| -rw-r--r-- | sci-biology/cutg/files/digest-cutg-145 | 1 |
4 files changed, 51 insertions, 1 deletions
diff --git a/sci-biology/cutg/ChangeLog b/sci-biology/cutg/ChangeLog index 2a9c99889d90..2af34a5fff6d 100644 --- a/sci-biology/cutg/ChangeLog +++ b/sci-biology/cutg/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/cutg # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/ChangeLog,v 1.7 2005/02/23 04:04:17 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/ChangeLog,v 1.8 2005/02/27 18:00:45 ribosome Exp $ + +*cutg-145 (27 Feb 2005) + + 27 Feb 2005; Olivier Fisette <ribosome@gentoo.org> +cutg-145.ebuild: + New version. 22 Feb 2005; Olivier Fisette <ribosome@gentoo.org> -cutg-143.ebuild, cutg-144.ebuild: diff --git a/sci-biology/cutg/Manifest b/sci-biology/cutg/Manifest index 5defa7d52b14..0ccbc7177138 100644 --- a/sci-biology/cutg/Manifest +++ b/sci-biology/cutg/Manifest @@ -1,4 +1,6 @@ +MD5 1baadd8a25bd57e159e68b20fae79446 cutg-145.ebuild 1132 MD5 87be393c35ee04253e643600de42b04c ChangeLog 1809 MD5 d14f29edef39d8d89b39a5787c3d141c metadata.xml 594 MD5 0312104e4eb2dd4805b902eb3d75d89c cutg-144.ebuild 1130 MD5 e35ab30eae79e0600feabc028e0db162 files/digest-cutg-144 63 +MD5 9c6a185b26bf5647beb885860099151f files/digest-cutg-145 63 diff --git a/sci-biology/cutg/cutg-145.ebuild b/sci-biology/cutg/cutg-145.ebuild new file mode 100644 index 000000000000..c29f1a481e2b --- /dev/null +++ b/sci-biology/cutg/cutg-145.ebuild @@ -0,0 +1,42 @@ +# Copyright 1999-2005 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/cutg-145.ebuild,v 1.1 2005/02/27 18:00:45 ribosome Exp $ + +DESCRIPTION="Codon usage tables calculated from GenBank" +HOMEPAGE="http://www.kazusa.or.jp/codon/" +SRC_URI="ftp://ftp.kazusa.or.jp/pub/codon/current/compressed/CUTG.${PV}.tar.gz" +LICENSE="public-domain" + +SLOT="0" +KEYWORDS="~x86 ~ppc ~ppc-macos ~ppc64" +IUSE="emboss minimal" +# Minimal build keeps only the indexed files (if applicable) and the documentation. +# The non-indexed database is not installed. + +S=${WORKDIR} + +src_compile() { + if use emboss; then + mkdir CODONS + echo + einfo "Indexing CUTG for usage with EMBOSS." + EMBOSS_DATA=. cutgextract -auto -directory ${S} || die \ + "Indexing CUTG failed." + echo + fi +} + +src_install() { + if ! use minimal; then + mkdir -p ${D}/usr/share/${PN} + mv *.codon *.spsum ${D}/usr/share/${PN} + fi + dodoc README + if use emboss; then + mkdir -p ${D}/usr/share/EMBOSS/data/CODONS + cd CODONS + for file in *; do + mv ${file} ${D}/usr/share/EMBOSS/data/CODONS + done + fi +} diff --git a/sci-biology/cutg/files/digest-cutg-145 b/sci-biology/cutg/files/digest-cutg-145 new file mode 100644 index 000000000000..cf3453c4baa4 --- /dev/null +++ b/sci-biology/cutg/files/digest-cutg-145 @@ -0,0 +1 @@ +MD5 13ab4f6f4831928ed4c7b7ae006d6c5f CUTG.145.tar.gz 132132082 |