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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2009-07-21 08:12:46 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-07-21 08:12:46 +0000 |
| commit | 7223a950bd128288f0a2e3222af89d890e515498 (patch) | |
| tree | ad11282766b3bff1be0c619911c511f455b7ff03 /sci-biology/lagan | |
| parent | Version bump. (diff) | |
| download | gentoo-2-7223a950bd128288f0a2e3222af89d890e515498.tar.gz gentoo-2-7223a950bd128288f0a2e3222af89d890e515498.tar.bz2 gentoo-2-7223a950bd128288f0a2e3222af89d890e515498.zip | |
Fix compilation with glibc-2.10, bug 273988
(Portage version: 2.2_rc30/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology/lagan')
| -rw-r--r-- | sci-biology/lagan/ChangeLog | 8 | ||||
| -rw-r--r-- | sci-biology/lagan/lagan-2.0-r1.ebuild (renamed from sci-biology/lagan/lagan-2.0.ebuild) | 15 |
2 files changed, 16 insertions, 7 deletions
diff --git a/sci-biology/lagan/ChangeLog b/sci-biology/lagan/ChangeLog index c48f7c0d4655..7222c8cba060 100644 --- a/sci-biology/lagan/ChangeLog +++ b/sci-biology/lagan/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/lagan # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/lagan/ChangeLog,v 1.1 2009/02/27 00:23:49 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/lagan/ChangeLog,v 1.2 2009/07/21 08:12:46 weaver Exp $ + +*lagan-2.0-r1 (21 Jul 2009) + + 21 Jul 2009; Andrey Kislyuk <weaver@gentoo.org> -lagan-2.0.ebuild, + +lagan-2.0-r1.ebuild: + Fix compilation with glibc-2.10, bug 273988 *lagan-2.0 (26 Feb 2009) diff --git a/sci-biology/lagan/lagan-2.0.ebuild b/sci-biology/lagan/lagan-2.0-r1.ebuild index 79049af85ace..9ce6c90116b8 100644 --- a/sci-biology/lagan/lagan-2.0.ebuild +++ b/sci-biology/lagan/lagan-2.0-r1.ebuild @@ -1,14 +1,16 @@ # Copyright 1999-2009 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/lagan/lagan-2.0.ebuild,v 1.1 2009/02/27 00:23:49 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/lagan/lagan-2.0-r1.ebuild,v 1.1 2009/07/21 08:12:46 weaver Exp $ + +EAPI="2" inherit eutils -MY_PV="20" +MY_P="lagan20" DESCRIPTION="LAGAN, Multi-LAGAN, Shuffle-LAGAN, Supermap: Whole-genome multiple alignment of genomic DNA" HOMEPAGE="http://lagan.stanford.edu/lagan_web/index.shtml" -SRC_URI="http://lagan.stanford.edu/lagan_web/lagan${MY_PV}.tar.gz" +SRC_URI="http://lagan.stanford.edu/lagan_web/${MY_P}.tar.gz" LICENSE="GPL-2" SLOT="0" @@ -18,11 +20,12 @@ KEYWORDS="~amd64 ~x86" DEPEND="" RDEPEND="" -S="${WORKDIR}/lagan${MY_PV}" +S="${WORKDIR}/${MY_P}" -src_unpack() { - unpack ${A} +src_prepare() { sed -i "/use Getopt::Long;/ i use lib \"/usr/share/${PN}/lib\";" "${S}/supermap.pl" || die + # NB: Testing with glibc-2.10 has uncovered a bug in src/utils/Sequence.h where libc getline is erroneously used instead of own getline + sed -i 's/getline/my_getline/' "${S}"/src/{anchors.c,glocal/io.cpp} || die epatch "${FILESDIR}"/${P}-*.patch } |