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authorOlivier Fisette <ribosome@gentoo.org>2007-07-01 19:24:23 +0000
committerOlivier Fisette <ribosome@gentoo.org>2007-07-01 19:24:23 +0000
commit320a512444b5ede39b0ba5ef9dc8cda85c0eb6f6 (patch)
tree86e0dc4e14007c009eac647062cbac68f231d2b0 /sci-biology/t-coffee
parentNew package, requested with bug #161520 (diff)
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Removed old version (sources are no longer available). There is no stable PPC version any longer (see bug #179327).
(Portage version: 2.1.2.7)
Diffstat (limited to 'sci-biology/t-coffee')
-rw-r--r--sci-biology/t-coffee/ChangeLog6
-rw-r--r--sci-biology/t-coffee/files/digest-t-coffee-3.843
-rw-r--r--sci-biology/t-coffee/t-coffee-3.84.ebuild58
3 files changed, 5 insertions, 62 deletions
diff --git a/sci-biology/t-coffee/ChangeLog b/sci-biology/t-coffee/ChangeLog
index 50f0fcfea9b4..2a89337421a8 100644
--- a/sci-biology/t-coffee/ChangeLog
+++ b/sci-biology/t-coffee/ChangeLog
@@ -1,6 +1,10 @@
# ChangeLog for sci-biology/t-coffee
# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.21 2007/06/27 12:08:45 pylon Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.22 2007/07/01 19:24:23 ribosome Exp $
+
+ 01 Jul 2007; Olivier Fisette <ribosome@gentoo.org> -t-coffee-3.84.ebuild:
+ Removed old version (sources are no longer available). There is no stable
+ PPC version any longer (see bug #179327).
22 May 2007; Christian Faulhammer <opfer@gentoo.org> t-coffee-4.96.ebuild:
x86 stable, bug 179327
diff --git a/sci-biology/t-coffee/files/digest-t-coffee-3.84 b/sci-biology/t-coffee/files/digest-t-coffee-3.84
deleted file mode 100644
index bc927afd27fc..000000000000
--- a/sci-biology/t-coffee/files/digest-t-coffee-3.84
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 f8f74db4132573b0ec8790e64c4cda4c T-COFFEE_distribution_Version_3.84.tar.gz 1625217
-RMD160 cda295fd0c2c432c8f802739a3748fcb01f40389 T-COFFEE_distribution_Version_3.84.tar.gz 1625217
-SHA256 1c062fe67b1817570fdce8f57999ce637863cc91b4feb91053ef805cc3f48eab T-COFFEE_distribution_Version_3.84.tar.gz 1625217
diff --git a/sci-biology/t-coffee/t-coffee-3.84.ebuild b/sci-biology/t-coffee/t-coffee-3.84.ebuild
deleted file mode 100644
index 7a583260fbfa..000000000000
--- a/sci-biology/t-coffee/t-coffee-3.84.ebuild
+++ /dev/null
@@ -1,58 +0,0 @@
-# Copyright 1999-2006 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-3.84.ebuild,v 1.3 2006/07/09 07:18:21 dberkholz Exp $
-
-inherit toolchain-funcs flag-o-matic
-
-DESCRIPTION="A multiple sequence alignment package"
-LICENSE="t-coffee"
-HOMEPAGE="http://igs-server.cnrs-mrs.fr/~cnotred/Projects_home_page/t_coffee_home_page.html"
-SRC_URI="http://igs-server.cnrs-mrs.fr/~cnotred/Packages/T-COFFEE_distribution_Version_${PV}.tar.gz"
-
-SLOT="0"
-IUSE=""
-KEYWORDS="ppc x86"
-
-RESTRICT="nomirror"
-
-DEPEND="sci-biology/clustalw"
-
-TCDIR="${WORKDIR}/T-COFFEE_distribution_Version_${PV}"
-S="${TCDIR}/t_coffee_source"
-
-src_unpack() {
- unpack ${A}
- cd "${S}"
- sed -e "s/CC = cc/CC = $(tc-getCC) ${CFLAGS}/" -i makefile || die \
- "Failed to patch makefile."
-}
-
-die_compile() {
- echo
- eerror "If you experience an internal compiler error (consult the above"
- eerror "messages), try compiling t-coffee using very modest compiler flags."
- eerror "See bug #114745 on the Gentoo Bugzilla for more details."
- die "Compilation failed"
-}
-
-src_compile() {
- [[ $(gcc-version) == "3.4" ]] && append-flags -fno-unit-at-a-time
- make all || die_compile
-}
-
-src_install() {
- cd "${TCDIR}"/bin
- dobin t_coffee || die "Failed to install program."
- insinto /usr/share/${PN}/lib/html
- doins ${TCDIR}/html/* || die "Failed to install HTML documentation,"
-
- dodoc ${TCDIR}/doc/README4T-COFFEE || die \
- "Failed to install basic documentation."
- insinto /usr/share/doc/${PF}
- doins ${TCDIR}/doc/t_coffee{_doc.{doc,pdf},.pdf} || die \
- "Failed to install manuals and articles."
- doins ${TCDIR}/doc/*.txt || die "Failed to install documentation."
-
- insinto /usr/share/${PN}/example
- doins ${TCDIR}/example/* || die "Failed to install example files."
-}