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author | Andrey Kislyuk <weaver@gentoo.org> | 2009-11-24 18:21:23 +0000 |
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committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-11-24 18:21:23 +0000 |
commit | 3b0f4b1eeae33f8f6acf1b7d22f0bb267ad6f7ea (patch) | |
tree | e6bdcb97e46be07fcd82d9912710b3e6040fbed7 /sci-biology/t-coffee | |
parent | imlib gtk use flag was renamed to deprecated (diff) | |
download | gentoo-2-3b0f4b1eeae33f8f6acf1b7d22f0bb267ad6f7ea.tar.gz gentoo-2-3b0f4b1eeae33f8f6acf1b7d22f0bb267ad6f7ea.tar.bz2 gentoo-2-3b0f4b1eeae33f8f6acf1b7d22f0bb267ad6f7ea.zip |
Version bump, take maintainership
(Portage version: 2.2_rc30/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology/t-coffee')
-rw-r--r-- | sci-biology/t-coffee/ChangeLog | 8 | ||||
-rw-r--r-- | sci-biology/t-coffee/metadata.xml | 4 | ||||
-rw-r--r-- | sci-biology/t-coffee/t-coffee-8.14.ebuild | 60 |
3 files changed, 71 insertions, 1 deletions
diff --git a/sci-biology/t-coffee/ChangeLog b/sci-biology/t-coffee/ChangeLog index b5b266530c59..4b7872f69ac7 100644 --- a/sci-biology/t-coffee/ChangeLog +++ b/sci-biology/t-coffee/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/t-coffee # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.36 2009/03/24 21:32:36 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.37 2009/11/24 18:21:23 weaver Exp $ + +*t-coffee-8.14 (24 Nov 2009) + + 24 Nov 2009; Andrey Kislyuk <weaver@gentoo.org> metadata.xml, + +t-coffee-8.14.ebuild: + Version bump, assume maintainership 24 Mar 2009; Olivier Fisette <ribosome@gentoo.org> metadata.xml: Giving up maintainership of this package. diff --git a/sci-biology/t-coffee/metadata.xml b/sci-biology/t-coffee/metadata.xml index 228a09e08036..3ea57edd4222 100644 --- a/sci-biology/t-coffee/metadata.xml +++ b/sci-biology/t-coffee/metadata.xml @@ -1,6 +1,10 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> <herd>sci-biology</herd> <longdescription> T-Coffee is a multiple sequence alignment package. Given a set of diff --git a/sci-biology/t-coffee/t-coffee-8.14.ebuild b/sci-biology/t-coffee/t-coffee-8.14.ebuild new file mode 100644 index 000000000000..773631d503d6 --- /dev/null +++ b/sci-biology/t-coffee/t-coffee-8.14.ebuild @@ -0,0 +1,60 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-8.14.ebuild,v 1.1 2009/11/24 18:21:23 weaver Exp $ + +EAPI="2" + +inherit toolchain-funcs flag-o-matic + +DESCRIPTION="A multiple sequence alignment package" +LICENSE="GPL-2" +HOMEPAGE="http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html" +SRC_URI="http://www.tcoffee.org/Packages/T-COFFEE_distribution_Version_${PV}.tar.gz" + +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~ppc ~x86" + +DEPEND="sci-biology/clustalw" +RDEPEND="${DEPEND}" + +TCDIR="${WORKDIR}/T-COFFEE_distribution_Version_${PV}" +S="${TCDIR}/t_coffee_source" + +die_compile() { + echo + eerror "If you experience an internal compiler error (consult the above" + eerror "messages), try compiling t-coffee using very modest compiler flags." + eerror "See bug #114745 on the Gentoo Bugzilla for more details." + die "Compilation failed" +} + +src_compile() { + [[ $(gcc-version) == "3.4" ]] && append-flags -fno-unit-at-a-time + [[ $(gcc-version) == "4.1" ]] && append-flags -fno-unit-at-a-time + CC="$(tc-getCC)" CFLAGS="${CFLAGS}" emake || die_compile +} + +src_install() { + dobin t_coffee || die "Failed to install program." + + insinto /usr/share/${PN}/lib/html + doins "${TCDIR}"/html/* \ + || die "Failed to install Web interface files." + + cd "${TCDIR}"/doc + dodoc aln_compare.doc.txt seq_reformat.doc.txt \ + t_coffee_technical.txt t_coffee_tutorial.txt \ + || die "Failed to install text documentation." + + dohtml t_coffee_technical.htm t_coffee_tutorial.htm \ + || die "Failed to install HTML documentation." + + insinto /usr/share/doc/${PF} + doins t_coffee_technical.doc t_coffee_tutorial.doc \ + || die "Failed to install DOC documentation." + + insinto /usr/share/${PN}/example + doins "${TCDIR}"/example/* \ + || die "Failed to install example files." +} |