New upstream version (5.05). Removed 4.45 as sources are no longer available.

(Portage version: 2.1.2.7)

4 files changed, 27 insertions, 18 deletions

diff --git a/sci-biology/t-coffee/ChangeLog b/sci-biology/t-coffee/ChangeLog
index 1a630c6a439d..693b81f16bc8 100644
--- a/sci-biology/t-coffee/ChangeLog
+++ b/sci-biology/t-coffee/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/t-coffee
 # Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.17 2007/03/09 02:43:13 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.18 2007/05/21 15:26:35 ribosome Exp $
+
+*t-coffee-5.05 (21 May 2007)
+
+  21 May 2007; Olivier Fisette <ribosome@gentoo.org> -t-coffee-4.45.ebuild,
+  +t-coffee-5.05.ebuild:
+  New upstream version (5.05). Removed 4.45 as sources are no longer available.
 
 *t-coffee-4.96 (09 Mar 2007)
 
diff --git a/sci-biology/t-coffee/files/digest-t-coffee-4.45 b/sci-biology/t-coffee/files/digest-t-coffee-4.45
deleted file mode 100644
index fee157903763..000000000000
--- a/sci-biology/t-coffee/files/digest-t-coffee-4.45
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 5d3e15767206720f4aff82ffea8bfb40 T-COFFEE_distribution_Version_4.45.tar.gz 2735436
-RMD160 f05110dff0d05c852b9a72be7247ebe527a4649c T-COFFEE_distribution_Version_4.45.tar.gz 2735436
-SHA256 256675fdb3e438839a179c2ca5019a14045fcb346836c9c9c54581e7694d4ca3 T-COFFEE_distribution_Version_4.45.tar.gz 2735436
diff --git a/sci-biology/t-coffee/files/digest-t-coffee-5.05 b/sci-biology/t-coffee/files/digest-t-coffee-5.05
new file mode 100644
index 000000000000..c72c1bd320c8
--- /dev/null
+++ b/sci-biology/t-coffee/files/digest-t-coffee-5.05
@@ -0,0 +1,3 @@
+MD5 aee1a51c8a73580de4e1c9c2de140b9b T-COFFEE_distribution_Version_5.05.tar.gz 2869348
+RMD160 edc62c922280ac627089d44997ce859b56950955 T-COFFEE_distribution_Version_5.05.tar.gz 2869348
+SHA256 494be7bfca83ee9701fb0fc5aba829fff0592c11173b95f239e39390ca3eeae8 T-COFFEE_distribution_Version_5.05.tar.gz 2869348
diff --git a/sci-biology/t-coffee/t-coffee-4.45.ebuild b/sci-biology/t-coffee/t-coffee-5.05.ebuild
index 1af0091b2ebb..bbd2fef331d0 100644
--- a/sci-biology/t-coffee/t-coffee-4.45.ebuild
+++ b/sci-biology/t-coffee/t-coffee-5.05.ebuild
@@ -1,13 +1,13 @@
-# Copyright 1999-2006 Gentoo Foundation
+# Copyright 1999-2007 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-4.45.ebuild,v 1.1 2006/09/13 23:52:04 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-5.05.ebuild,v 1.1 2007/05/21 15:26:35 ribosome Exp $
 
 inherit toolchain-funcs flag-o-matic
 
 DESCRIPTION="A multiple sequence alignment package"
 LICENSE="t-coffee"
-HOMEPAGE="http://igs-server.cnrs-mrs.fr/~cnotred/Projects_home_page/t_coffee_home_page.html"
-SRC_URI="http://igs-server.cnrs-mrs.fr/~cnotred/Packages/T-COFFEE_distribution_Version_${PV}.tar.gz"
+HOMEPAGE="http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html"
+SRC_URI="http://www.tcoffee.org/Packages/T-COFFEE_distribution_Version_${PV}.tar.gz"
 
 SLOT="0"
 IUSE=""
@@ -42,18 +42,21 @@ src_compile() {
 }
 
 src_install() {
-	cd "${TCDIR}"/bin
-	dobin t_coffee || die "Failed to install program."
-	insinto /usr/share/${PN}/lib/html
-	doins ${TCDIR}/html/* || die "Failed to install HTML documentation,"
+	dobin "${TCDIR}"/bin/t_coffee || die "Failed to install program."
 
-	dodoc ${TCDIR}/doc/README4T-COFFEE || die \
-		"Failed to install basic documentation."
+	insinto /usr/share/${PN}/lib/html
+	doins "${TCDIR}"/html/* || die "Failed to install Web interface files."
+
+	cd "${TCDIR}"/doc
+	dodoc aln_compare.doc.txt README4T-COFFEE seq_reformat.doc.txt \
+			t_coffee_technical.txt t_coffee_tutorial.txt || die \
+			"Failed to install text documentation."
+	dohtml t_coffee_technical.htm t_coffee_tutorial.htm || die \
+			"Failed to install HTML documentation."
 	insinto /usr/share/doc/${PF}
-	doins ${TCDIR}/doc/t_coffee{_doc.{doc,pdf},.pdf} || die \
-		"Failed to install manuals and articles."
-	doins ${TCDIR}/doc/*.txt || die "Failed to install documentation."
+	doins t_coffee.pdf t_coffee_technical.doc t_coffee_tutorial.doc || die \
+	"Failed to install DOC and PDF documentation."
 
 	insinto /usr/share/${PN}/example
-	doins ${TCDIR}/example/* || die "Failed to install example files."
+	doins "${TCDIR}"/example/* || die "Failed to install example files."
 }