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| author |   Sergey Popov <pinkbyte@gentoo.org> | 2014-10-17 08:07:31 +0000 |
|---|---|---|
| committer | Sergey Popov <pinkbyte@gentoo.org> | 2014-10-17 08:07:31 +0000 |
| commit | a29c4c9913ad44fa4af0c6c5dde5cef6c685bf42 (patch) | |
| tree | 552abf4116de94bd3523dc9b0cd8fff7f926edec /sci-biology/tophat | |
| parent | app-backup/duply: Version BUmp (diff) | |
| download | gentoo-2-a29c4c9913ad44fa4af0c6c5dde5cef6c685bf42.tar.gz gentoo-2-a29c4c9913ad44fa4af0c6c5dde5cef6c685bf42.tar.bz2 gentoo-2-a29c4c9913ad44fa4af0c6c5dde5cef6c685bf42.zip | |
Non-maintainer commit: fix building, approved by Justin Lecher
(Portage version: 2.2.12/cvs/Linux x86_64, signed Manifest commit with key 0x1F357D42)
Diffstat (limited to 'sci-biology/tophat')
| -rw-r--r-- | sci-biology/tophat/ChangeLog | 5 | ||||
| -rw-r--r-- | sci-biology/tophat/tophat-1.0.12.ebuild | 10 |
2 files changed, 11 insertions, 4 deletions
diff --git a/sci-biology/tophat/ChangeLog b/sci-biology/tophat/ChangeLog index 7fdca2b3f069..3f7a5ca73162 100644 --- a/sci-biology/tophat/ChangeLog +++ b/sci-biology/tophat/ChangeLog @@ -1,6 +1,9 @@ # ChangeLog for sci-biology/tophat # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/tophat/ChangeLog,v 1.12 2014/03/06 09:46:50 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/tophat/ChangeLog,v 1.13 2014/10/17 08:07:31 pinkbyte Exp $ + + 17 Oct 2014; Sergey Popov <pinkbyte@gentoo.org> tophat-1.0.12.ebuild: + Non-maintainer commit: fix building, approved by Justin Lecher *tophat-2.0.9 (06 Mar 2014) diff --git a/sci-biology/tophat/tophat-1.0.12.ebuild b/sci-biology/tophat/tophat-1.0.12.ebuild index ca2c4d3959b0..4d43179fca2f 100644 --- a/sci-biology/tophat/tophat-1.0.12.ebuild +++ b/sci-biology/tophat/tophat-1.0.12.ebuild @@ -1,6 +1,6 @@ -# Copyright 1999-2012 Gentoo Foundation +# Copyright 1999-2014 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/tophat/tophat-1.0.12.ebuild,v 1.5 2012/04/25 16:39:53 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/tophat/tophat-1.0.12.ebuild,v 1.6 2014/10/17 08:07:31 pinkbyte Exp $ EAPI="2" @@ -19,8 +19,12 @@ DEPEND="" RDEPEND="sci-biology/bowtie" src_prepare() { - # fix gcc-4.4 missing include + # fix missing includes sed -i '/#include <string>/ a #include <stdio.h>' "${S}/src/gff_juncs.cpp" || die + sed -i \ + -e '/#include <stdio.h>/ a #include <unistd.h>' \ + "${S}/src/prep_reads.cpp" \ + "${S}/src/extract_reads.cpp" || die # fix parallel make race sed -i -e 's/\$(top_builddir)\/src\///g' src/Makefile.am || die # remove broken arch-dependent CFLAGS setting |