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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2009-09-30 00:09:21 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-09-30 00:09:21 +0000 |
| commit | 40dd44416aad7437177248afdff8033886fd299a (patch) | |
| tree | fcb0d4182850277cabe8821b6361ce35dae3ff43 /sci-biology | |
| parent | Bump as requested by upstream. License change. (diff) | |
| download | gentoo-2-40dd44416aad7437177248afdff8033886fd299a.tar.gz gentoo-2-40dd44416aad7437177248afdff8033886fd299a.tar.bz2 gentoo-2-40dd44416aad7437177248afdff8033886fd299a.zip | |
Version bump
(Portage version: 2.2_rc30/cvs/Linux x86_64, RepoMan options: --force)
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/gibbs/ChangeLog | 9 | ||||
| -rw-r--r-- | sci-biology/gibbs/gibbs-3.1.ebuild | 43 |
2 files changed, 50 insertions, 2 deletions
diff --git a/sci-biology/gibbs/ChangeLog b/sci-biology/gibbs/ChangeLog index ac0ccc13edb9..5a09a48c92cd 100644 --- a/sci-biology/gibbs/ChangeLog +++ b/sci-biology/gibbs/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/gibbs -# Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/gibbs/ChangeLog,v 1.4 2007/02/22 01:26:22 jokey Exp $ +# Copyright 2000-2009 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/gibbs/ChangeLog,v 1.5 2009/09/30 00:09:21 weaver Exp $ + +*gibbs-3.1 (29 Sep 2009) + + 29 Sep 2009; Andrey Kislyuk <weaver@gentoo.org> +gibbs-3.1.ebuild: + Version bump, rewrite ebuild (package rewritten) 22 Feb 2007; Markus Ullmann <jokey@gentoo.org> ChangeLog: Redigest for Manifest2 diff --git a/sci-biology/gibbs/gibbs-3.1.ebuild b/sci-biology/gibbs/gibbs-3.1.ebuild new file mode 100644 index 000000000000..584dbbfd7fe2 --- /dev/null +++ b/sci-biology/gibbs/gibbs-3.1.ebuild @@ -0,0 +1,43 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/gibbs/gibbs-3.1.ebuild,v 1.1 2009/09/30 00:09:21 weaver Exp $ + +EAPI="2" + +inherit autotools + +DESCRIPTION="The Gibbs Motif Sampler identifies motifs, conserved regions, in DNA or protein sequences" +HOMEPAGE="http://bayesweb.wadsworth.org/gibbs/gibbs.html" +SRC_URI="mirror://gentoo/gibbs-${PV}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +IUSE="mpi" +KEYWORDS="~amd64 ~x86" + +DEPEND="mpi? ( virtual/mpi + sys-cluster/mpe2 )" +RDEPEND="${DEPEND}" + +src_prepare() { + sed -i -e 's/CFLAGS="$OPTFLAGS/CFLAGS="$CFLAGS $OPTFLAGS/' \ + -e 's/-Werror//' configure.in || die + eautoreconf +} + +src_configure() { + if use mpi; then export CC=mpicc; fi + econf $(use_enable mpi) || die +} + +src_install() { + emake DESTDIR="${D}" install || die "install failed" + exeinto /usr/share/${PN} + doexe *.pl + dodoc README ChangeLog +} + +pkg_postinst() { + einfo "Supplementary Perl scripts for Gibbs have been installed into /usr/share/${PN}." + einfo "These scripts require installation of sci-biology/bioperl." +} |