sci-biology/clustalw: Readd SLOT=1 ebuild; punt base.eclass usage; bump to EAPI=5

(Portage version: 2.2.8/cvs/Linux x86_64, RepoMan options: --force, signed Manifest commit with key B9D4F231BD1558AB!)

3 files changed, 77 insertions, 1 deletions

diff --git a/sci-biology/clustalw/ChangeLog b/sci-biology/clustalw/ChangeLog
index c753f3a6aad7..55e051f5dd42 100644
--- a/sci-biology/clustalw/ChangeLog
+++ b/sci-biology/clustalw/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/clustalw
 # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalw/ChangeLog,v 1.29 2014/01/06 08:25:30 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalw/ChangeLog,v 1.30 2014/01/06 08:46:49 jlec Exp $
+
+  06 Jan 2014; Justin Lecher <jlec@gentoo.org> +clustalw-1.83-r2.ebuild,
+  +clustalw-1.83-r3.ebuild:
+  Readd SLOT=1 ebuild; punt base.eclass usage; bump to EAPI=5
 
   06 Jan 2014; Justin Lecher <jlec@gentoo.org> -clustalw-1.83-r2.ebuild,
   -clustalw-1.83-r3.ebuild, -clustalw-2.0.11.ebuild, -clustalw-2.0.12.ebuild:
diff --git a/sci-biology/clustalw/clustalw-1.83-r2.ebuild b/sci-biology/clustalw/clustalw-1.83-r2.ebuild
new file mode 100644
index 000000000000..7bdebde52f3c
--- /dev/null
+++ b/sci-biology/clustalw/clustalw-1.83-r2.ebuild
@@ -0,0 +1,36 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalw/clustalw-1.83-r2.ebuild,v 1.6 2014/01/06 08:46:49 jlec Exp $
+
+inherit toolchain-funcs
+
+DESCRIPTION="General purpose multiple alignment program for DNA and proteins"
+HOMEPAGE="http://www.embl-heidelberg.de/~seqanal/"
+SRC_URI="ftp://ftp.ebi.ac.uk/pub/software/unix/clustalw/${PN}${PV}.UNIX.tar.gz"
+
+LICENSE="clustalw"
+SLOT="1"
+KEYWORDS="alpha amd64 ppc ppc64 sparc x86"
+IUSE=""
+
+S="${WORKDIR}"/${PN}${PV}
+
+src_unpack() {
+	unpack ${A}
+	cd "${S}"
+	sed -i -e "s/CC	= cc/CC	= $(tc-getCC)/" \
+		-e "s/CFLAGS  = -c -O/CFLAGS  = -c ${CFLAGS}/" \
+		-e "s/LFLAGS	= -O -lm/LFLAGS	= -lm ${CFLAGS}/" makefile || die
+	sed -i -e "s%clustalw_help%/usr/share/doc/${PF}/clustalw_help%" clustalw.c || die
+}
+
+src_compile() {
+	emake || die
+}
+
+src_install() {
+	dobin clustalw || die
+	dodoc README clustalv.doc clustalw.doc clustalw.ms
+	insinto /usr/share/doc/${PF}
+	doins clustalw_help
+}
diff --git a/sci-biology/clustalw/clustalw-1.83-r3.ebuild b/sci-biology/clustalw/clustalw-1.83-r3.ebuild
new file mode 100644
index 000000000000..a60e97100862
--- /dev/null
+++ b/sci-biology/clustalw/clustalw-1.83-r3.ebuild
@@ -0,0 +1,36 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalw/clustalw-1.83-r3.ebuild,v 1.4 2014/01/06 08:46:49 jlec Exp $
+
+EAPI=5
+
+inherit eutils toolchain-funcs
+
+DESCRIPTION="General purpose multiple alignment program for DNA and proteins"
+HOMEPAGE="http://www.embl-heidelberg.de/~seqanal/"
+SRC_URI="ftp://ftp.ebi.ac.uk/pub/software/unix/clustalw/${PN}${PV}.UNIX.tar.gz"
+
+LICENSE="clustalw"
+SLOT="1"
+KEYWORDS="~alpha ~amd64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris"
+IUSE=""
+
+S="${WORKDIR}"/${PN}${PV}
+
+src_prepare() {
+	epatch "${FILESDIR}"/${PV}-as-needed.patch
+
+	sed \
+		-e "/^CC/s:cc:$(tc-getCC):g" \
+		-i makefile || die
+	sed \
+		-e "s%clustalw_help%/usr/share/doc/${PF}/clustalw_help%" \
+		-i clustalw.c || die
+}
+
+src_install() {
+	dobin clustalw
+	dodoc README clustalv.doc clustalw.doc clustalw.ms
+	insinto /usr/share/doc/${PF}
+	doins clustalw_help
+}