sci-chemistry/coot: Drop old

(Portage version: 2.2.6/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)

3 files changed, 5 insertions, 329 deletions

diff --git a/sci-chemistry/coot/ChangeLog b/sci-chemistry/coot/ChangeLog
index c49a862b9628..9f54695f0d92 100644
--- a/sci-chemistry/coot/ChangeLog
+++ b/sci-chemistry/coot/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-chemistry/coot
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/coot/ChangeLog,v 1.60 2013/09/15 08:31:02 ago Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/coot/ChangeLog,v 1.61 2013/09/18 09:21:09 jlec Exp $
+
+  18 Sep 2013; Justin Lecher <jlec@gentoo.org> -coot-0.6.2.ebuild,
+  -coot-0.6.2-r1.ebuild:
+  Drop old
 
   15 Sep 2013; Agostino Sarubbo <ago@gentoo.org> coot-0.7.ebuild:
   Stable for x86, wrt bug #477166
diff --git a/sci-chemistry/coot/coot-0.6.2-r1.ebuild b/sci-chemistry/coot/coot-0.6.2-r1.ebuild
deleted file mode 100644
index ce8397bd45d5..000000000000
--- a/sci-chemistry/coot/coot-0.6.2-r1.ebuild
+++ /dev/null
@@ -1,166 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/coot/coot-0.6.2-r1.ebuild,v 1.6 2013/08/26 07:52:29 jlec Exp $
-
-EAPI=3
-
-PYTHON_DEPEND="2"
-
-AUTOTOOLS_AUTORECONF="true"
-
-inherit autotools-utils flag-o-matic python toolchain-funcs versionator
-
-MY_S2_PV=$(replace_version_separator 2 - ${PV})
-MY_S2_P=${PN}-${MY_S2_PV/pre1/pre-1}
-MY_S_P=${MY_S2_P}-${PR/r/revision-}
-MY_PV=${PV}
-MY_P=${PN}-${MY_PV}
-
-DESCRIPTION="Crystallographic Object-Oriented Toolkit for model building, completion and validation"
-HOMEPAGE="http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/"
-SRC_URI="
-	http://www.biop.ox.ac.uk/coot/software/source/releases/${MY_P}.tar.gz
-	test? ( http://dev.gentoo.org/~jlec/distfiles/greg-data-${PV}.tar.gz  )"
-
-SLOT="0"
-LICENSE="GPL-3"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="+openmp static-libs test"
-
-AUTOTOOLS_IN_SOURCE_BUILD=1
-
-SCIDEPS="
-	>=sci-libs/ccp4-libs-6.1
-	sci-libs/clipper
-	>=sci-libs/coot-data-2
-	>=sci-libs/gsl-1.3
-	>=sci-libs/mmdb-1.23
-	sci-libs/ssm
-	<sci-libs/monomer-db-1
-	sci-chemistry/reduce
-	<sci-chemistry/refmac-5.6
-	sci-chemistry/probe"
-
-XDEPS="
-	gnome-base/libgnomecanvas
-	gnome-base/librsvg:2
-	media-libs/libpng
-	media-libs/freeglut
-	x11-libs/gtk+:2
-	x11-libs/gtkglext"
-
-SCHEMEDEPS="
-	dev-scheme/net-http
-	dev-scheme/guile-gui
-	>=dev-scheme/guile-lib-0.1.6
-	dev-scheme/guile-www
-	>=x11-libs/guile-gtk-2.1"
-
-RDEPEND="
-	${SCIDEPS}
-	${XDEPS}
-	${SCHEMEDEPS}
-	dev-python/pygtk:2
-	>=dev-libs/gmp-4.2.2-r2
-	>=net-misc/curl-7.19.6
-	net-dns/libidn"
-DEPEND="${RDEPEND}
-	dev-lang/swig
-	sys-devel/bc
-	test? ( dev-scheme/greg )"
-
-S="${WORKDIR}/${MY_P}"
-
-pkg_setup() {
-	if use openmp; then
-		tc-has-openmp || die "Please use an OPENMP capable compiler"
-		has_version '<sys-devel/libtool-2.4-r2' && append-ldflags $(no-as-needed)
-	fi
-	python_set_active_version 2
-}
-
-PATCHES=(
-	"${FILESDIR}"/${PV}-clipper-config.patch
-	"${FILESDIR}"/${PV}-mmdb-config.patch
-	"${FILESDIR}"/${PV}-gl.patch
-	"${FILESDIR}"/${PV}-test.patch
-	"${FILESDIR}"/${PV}-ssm.patch
-	"${FILESDIR}"/${PV}-libpng15.patch
-	)
-
-src_prepare() {
-	sed \
-		-e "s:AM_COOT_SYS_BUILD_TYPE:COOT_SYS_BUILD_TYPE=Gentoo-Linux-$(PYTHON)-gtk2 ; AC_MSG_RESULT([\$COOT_SYS_BUILD_TYPE]); AC_SUBST(COOT_SYS_BUILD_TYPE):g" \
-		-i configure.in || die
-
-	autotools-utils_src_prepare
-}
-
-src_configure() {
-	# All the --with's are used to activate various parts.
-	# Yes, this is broken behavior.
-	local myeconfargs=(
-		--includedir='${prefix}/include/coot'
-		--with-gtkcanvas-prefix="${EPREFIX}/usr"
-		--with-gtkgl-prefix="${EPREFIX}/usr"
-		--with-guile
-		--with-python="${EPREFIX}/usr"
-		--with-guile-gtk
-		--with-gtk2
-		--with-pygtk
-		$(use_enable openmp)
-		)
-	autotools-utils_src_configure
-}
-
-src_compile() {
-	autotools-utils_src_compile
-	python_convert_shebangs $(python_get_version) "${S}"/src/coot_gtk2.py
-	cp "${S}"/src/coot_gtk2.py python/coot.py || die
-}
-
-src_test() {
-	source "${EPREFIX}/etc/profile.d/40ccp4.setup.sh"
-	mkdir "${T}"/coot_test
-
-	export COOT_STANDARD_RESIDUES="${S}/standard-residues.pdb"
-	export COOT_SCHEME_DIR="${S}/scheme/"
-	export COOT_RESOURCES_FILE="${S}/cootrc"
-	export COOT_PIXMAPS_DIR="${S}/pixmaps"
-	export COOT_DATA_DIR="${S}"
-	export COOT_PYTHON_DIR="${S}/python"
-	export PYTHONPATH="${COOT_PYTHON_DIR}:${PYTHONPATH}"
-	export PYTHONHOME="${EPREFIX}"/usr
-	export CCP4_SCR="${T}"/coot_test
-	export CLIBD_MON="${EPREFIX}/usr/share/ccp4/data/monomers/"
-	export SYMINFO="${S}/syminfo.lib"
-
-	export COOT_TEST_DATA_DIR="${WORKDIR}"/data/greg-data
-
-	cat > command-line-greg.scm <<- EOF
-	(use-modules (ice-9 greg))
-		(set! greg-tools (list "greg-tests"))
-			(set! greg-debug #t)
-			(set! greg-verbose 5)
-			(let ((r (greg-test-run)))
-				(if r
-				(coot-real-exit 0)
-				(coot-real-exit 1)))
-	EOF
-
-	einfo "Running test with following paths ..."
-	einfo "COOT_STANDARD_RESIDUES $COOT_STANDARD_RESIDUES"
-	einfo "COOT_SCHEME_DIR $COOT_SCHEME_DIR"
-	einfo "COOT_RESOURCES_FILE $COOT_RESOURCES_FILE"
-	einfo "COOT_PIXMAPS_DIR $COOT_PIXMAPS_DIR"
-	einfo "COOT_DATA_DIR $COOT_DATA_DIR"
-	einfo "COOT_PYTHON_DIR $COOT_PYTHON_DIR"
-	einfo "PYTHONPATH $PYTHONPATH"
-	einfo "PYTHONHOME $PYTHONHOME"
-	einfo "CCP4_SCR ${CCP4_SCR}"
-	einfo "CLIBD_MON ${CLIBD_MON}"
-	einfo "SYMINFO ${SYMINFO}"
-
-	"${S}"/src/coot-real --no-graphics --script command-line-greg.scm || die
-	"${S}"/src/coot-real --no-graphics --script python-tests/coot_unittest.py || die
-}
diff --git a/sci-chemistry/coot/coot-0.6.2.ebuild b/sci-chemistry/coot/coot-0.6.2.ebuild
deleted file mode 100644
index f17d1f5542cb..000000000000
--- a/sci-chemistry/coot/coot-0.6.2.ebuild
+++ /dev/null
@@ -1,162 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/coot/coot-0.6.2.ebuild,v 1.13 2013/08/26 07:52:29 jlec Exp $
-
-EAPI=3
-
-PYTHON_DEPEND="2"
-
-inherit autotools base eutils flag-o-matic python toolchain-funcs versionator
-
-MY_S2_PV=$(replace_version_separator 2 - ${PV})
-MY_S2_P=${PN}-${MY_S2_PV/pre1/pre-1}
-MY_S_P=${MY_S2_P}-${PR/r/revision-}
-MY_PV=${PV}
-MY_P=${PN}-${MY_PV}
-
-DESCRIPTION="Crystallographic Object-Oriented Toolkit for model building, completion and validation"
-HOMEPAGE="http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/"
-SRC_URI="
-	http://www.biop.ox.ac.uk/coot/software/source/releases/${MY_P}.tar.gz
-	test? ( http://dev.gentoo.org/~jlec/distfiles/greg-data-${PV}.tar.gz  )"
-
-SLOT="0"
-LICENSE="GPL-3"
-KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
-IUSE="+openmp test"
-
-SCIDEPS="
-	>=sci-libs/ccp4-libs-6.1
-	sci-libs/clipper
-	>=sci-libs/coot-data-2
-	>=sci-libs/gsl-1.3
-	>=sci-libs/mmdb-1.23
-	sci-libs/ssm
-	<sci-libs/monomer-db-1
-	sci-chemistry/reduce
-	<sci-chemistry/refmac-5.6
-	sci-chemistry/probe"
-
-XDEPS="
-	gnome-base/libgnomecanvas
-	gnome-base/librsvg:2
-	media-libs/libpng
-	media-libs/freeglut
-	x11-libs/gtk+:2
-	x11-libs/gtkglext"
-
-SCHEMEDEPS="
-	dev-scheme/net-http
-	dev-scheme/guile-gui
-	>=dev-scheme/guile-lib-0.1.6
-	dev-scheme/guile-www
-	>=x11-libs/guile-gtk-2.1"
-
-RDEPEND="
-	${SCIDEPS}
-	${XDEPS}
-	${SCHEMEDEPS}
-	dev-python/pygtk:2
-	>=dev-libs/gmp-4.2.2-r2
-	>=net-misc/curl-7.19.6
-	net-dns/libidn"
-DEPEND="${RDEPEND}
-	dev-lang/swig
-	sys-devel/bc
-	test? ( dev-scheme/greg )"
-
-S="${WORKDIR}/${MY_P}"
-
-pkg_setup() {
-	if use openmp; then
-		tc-has-openmp || die "Please use an OPENMP capable compiler"
-		has_version '<sys-devel/libtool-2.4-r2' && append-ldflags $(no-as-needed)
-	fi
-	python_set_active_version 2
-}
-
-PATCHES=(
-	"${FILESDIR}"/${PV}-clipper-config.patch
-	"${FILESDIR}"/${PV}-mmdb-config.patch
-	"${FILESDIR}"/${PV}-gl.patch
-	"${FILESDIR}"/${PV}-test.patch
-	"${FILESDIR}"/${PV}-ssm.patch
-	"${FILESDIR}"/${PV}-libpng15.patch
-	)
-
-src_prepare() {
-	sed \
-		-e "s:AM_COOT_SYS_BUILD_TYPE:COOT_SYS_BUILD_TYPE=Gentoo-Linux-$(PYTHON)-gtk2 ; AC_MSG_RESULT([\$COOT_SYS_BUILD_TYPE]); AC_SUBST(COOT_SYS_BUILD_TYPE):g" \
-		-i configure.in || die
-
-	base_src_prepare
-
-	eautoreconf
-}
-
-src_configure() {
-	# All the --with's are used to activate various parts.
-	# Yes, this is broken behavior.
-	econf \
-		--includedir='${prefix}/include/coot' \
-		--with-gtkcanvas-prefix="${EPREFIX}/usr" \
-		--with-gtkgl-prefix="${EPREFIX}/usr" \
-		--with-guile \
-		--with-python="${EPREFIX}/usr" \
-		--with-guile-gtk \
-		--with-gtk2 \
-		--with-pygtk \
-		$(use_enable openmp)
-}
-
-src_compile() {
-	emake || die "emake failed"
-	python_convert_shebangs $(python_get_version) src/coot_gtk2.py
-	cp "${S}"/src/coot_gtk2.py python/coot.py || die
-}
-
-src_test() {
-	source "${EPREFIX}/etc/profile.d/40ccp4.setup.sh"
-	mkdir "${T}"/coot_test
-
-	export COOT_STANDARD_RESIDUES="${S}/standard-residues.pdb"
-	export COOT_SCHEME_DIR="${S}/scheme/"
-	export COOT_RESOURCES_FILE="${S}/cootrc"
-	export COOT_PIXMAPS_DIR="${S}/pixmaps"
-	export COOT_DATA_DIR="${S}"
-	export COOT_PYTHON_DIR="${S}/python"
-	export PYTHONPATH="${COOT_PYTHON_DIR}:${PYTHONPATH}"
-	export PYTHONHOME="${EPREFIX}"/usr
-	export CCP4_SCR="${T}"/coot_test
-	export CLIBD_MON="${EPREFIX}/usr/share/ccp4/data/monomers/"
-	export SYMINFO="${S}/syminfo.lib"
-
-	export COOT_TEST_DATA_DIR="${WORKDIR}"/data/greg-data
-
-	cat > command-line-greg.scm <<- EOF
-	(use-modules (ice-9 greg))
-		(set! greg-tools (list "greg-tests"))
-			(set! greg-debug #t)
-			(set! greg-verbose 5)
-			(let ((r (greg-test-run)))
-				(if r
-				(coot-real-exit 0)
-				(coot-real-exit 1)))
-	EOF
-
-	einfo "Running test with following paths ..."
-	einfo "COOT_STANDARD_RESIDUES $COOT_STANDARD_RESIDUES"
-	einfo "COOT_SCHEME_DIR $COOT_SCHEME_DIR"
-	einfo "COOT_RESOURCES_FILE $COOT_RESOURCES_FILE"
-	einfo "COOT_PIXMAPS_DIR $COOT_PIXMAPS_DIR"
-	einfo "COOT_DATA_DIR $COOT_DATA_DIR"
-	einfo "COOT_PYTHON_DIR $COOT_PYTHON_DIR"
-	einfo "PYTHONPATH $PYTHONPATH"
-	einfo "PYTHONHOME $PYTHONHOME"
-	einfo "CCP4_SCR ${CCP4_SCR}"
-	einfo "CLIBD_MON ${CLIBD_MON}"
-	einfo "SYMINFO ${SYMINFO}"
-
-	"${S}"/src/coot-real --no-graphics --script command-line-greg.scm || die
-	"${S}"/src/coot-real --no-graphics --script python-tests/coot_unittest.py || die
-}