Added gcc-4.3 compatibility patch.

(Portage version: 2.2_rc3/cvs/Linux 2.6.25-SENTINEL-5 i686)

1 files changed, 67 insertions, 0 deletions

diff --git a/sci-chemistry/maid/files/maid-gcc4.3.patch b/sci-chemistry/maid/files/maid-gcc4.3.patch
new file mode 100644
index 000000000000..6b793541b837
--- /dev/null
+++ b/sci-chemistry/maid/files/maid-gcc4.3.patch
@@ -0,0 +1,67 @@
+diff -Naur glmaid_dist/bone.c++ glmaid_dist.new/bone.c++
+--- glmaid_dist/bone.c++	2001-11-12 08:35:49.000000000 -0500
++++ glmaid_dist.new/bone.c++	2008-07-27 10:52:35.000000000 -0400
+@@ -15,7 +15,7 @@
+    2) Set value that are going to be revoved equal to -MARCHAR rather then +MAXCHAR so can use MAXCHAR as a real value
+    3) Set removed value = REMOVE (- =100), rather then 0
+ */
+-
++#include <cstring>
+ #include "drawwindow.h"
+ //#include "screen.h"
+ #include "math.h"
+diff -Naur glmaid_dist/checkfit.c++ glmaid_dist.new/checkfit.c++
+--- glmaid_dist/checkfit.c++	2001-11-12 08:35:49.000000000 -0500
++++ glmaid_dist.new/checkfit.c++	2008-07-27 10:52:05.000000000 -0400
+@@ -1,7 +1,7 @@
+ /* checkfit.c++   Moved routines used to check and cut the final fit
+    for trace.c++ to here
+ */
+-
++#include <cstring>
+ #include "drawwindow.h"
+ #include "math.h"
+ #include "trace.h"
+diff -Naur glmaid_dist/combine.c++ glmaid_dist.new/combine.c++
+--- glmaid_dist/combine.c++	2001-11-12 08:35:50.000000000 -0500
++++ glmaid_dist.new/combine.c++	2008-07-27 10:52:12.000000000 -0400
+@@ -22,6 +22,7 @@
+    6) Next - run combinefit:
+        This looks through fits to find fits with some overlap of seq. assighment.
+ */
++#include <cstring>
+ #include "drawwindow.h"
+ #include "math.h"
+ #include "trace.h" // includes a number of "extern .... " lines
+diff -Naur glmaid_dist/fittopdb.c++ glmaid_dist.new/fittopdb.c++
+--- glmaid_dist/fittopdb.c++	2001-11-12 08:35:50.000000000 -0500
++++ glmaid_dist.new/fittopdb.c++	2008-07-27 10:52:48.000000000 -0400
+@@ -56,6 +56,7 @@
+    strcpy(aaname[2],"SER");
+ VIII) in maid - each fit is a separate file, in maid - one file
+ */
++#include <cstring>
+ #include "peptide.h"
+ #include "drawwindow.h"  // also calls global.h
+ #include "trace.h"
+diff -Naur glmaid_dist/initialize.c++ glmaid_dist.new/initialize.c++
+--- glmaid_dist/initialize.c++	2001-11-12 08:35:50.000000000 -0500
++++ glmaid_dist.new/initialize.c++	2008-07-27 10:52:42.000000000 -0400
+@@ -1,4 +1,5 @@
+ // Initial values called from main
++#include <cstring>
+ #include "tordyn.h" // routines for torsiondynamics
+ #include "peptide.h"  // routines for peptide creation and drawing
+ #include "drawwindow.h"  // also calls global.h
+diff -Naur glmaid_dist/trace.c++ glmaid_dist.new/trace.c++
+--- glmaid_dist/trace.c++	2001-11-12 08:35:49.000000000 -0500
++++ glmaid_dist.new/trace.c++	2008-07-27 10:52:22.000000000 -0400
+@@ -3,7 +3,7 @@
+ SEE:  trace.notes
+ 1=ca,2=c,3=o;4=n,5=cb; 6=cb2 in pos
+ */
+-      
++#include <cstring>      
+ #include "drawwindow.h"
+ #include "math.h"
+ #include "trace.h"