Initial import in main tree

(Portage version: 2.2.8-prefix/cvs/Linux x86_64, signed Manifest commit with key 0x13CB1360)

4 files changed, 254 insertions, 0 deletions

diff --git a/sci-libs/mumps/ChangeLog b/sci-libs/mumps/ChangeLog
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+# ChangeLog for sci-libs/mumps
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/mumps/ChangeLog,v 1.1 2014/01/14 18:47:26 bicatali Exp $
+
+  14 Jan 2014; Sébastien Fabbro <bicatali@gentoo.org> +mumps-4.10.0.ebuild,
+  +metadata.xml:
+  Initial import in main tree
+
+  17 Jun 2013; Justin Bronder <jsbronder@gentoo.org> mumps-4.10.0-r2.ebuild:
+  Don't let openmpi override malloc, works around sandbox issue in #462602
+
+*mumps-4.10.0-r2 (11 Dec 2012)
+
+  11 Dec 2012; Sébastien Fabbro <bicatali@gentoo.org> +mumps-4.10.0-r2.ebuild,
+  -mumps-4.10.0-r1.ebuild, metadata.xml:
+  sci-libs/mumps: Install libpord, force -j1 on makefile because of random
+  parallel build failures, separate dummy sequential mpi library from the common
+  mumps library
+
+  15 Jul 2012; Sébastien Fabbro <bicatali@gentoo.org> mumps-4.10.0-r1.ebuild:
+  sci-libs/mumps: Merge dummy sequential mpi into sequential mumps
+
+  13 Jul 2012; Sébastien Fabbro <bicatali@gentoo.org> mumps-4.10.0.ebuild:
+  sci-libs/mumps: fix underlinking for sequential library
+
+  12 Jul 2012; Sébastien Fabbro <bicatali@gentoo.org> mumps-4.10.0.ebuild:
+  sci-libs/mumps: Shared library fixes and prefix love
+
+  12 Jul 2012; Sébastien Fabbro <bicatali@gentoo.org> mumps-4.10.0.ebuild:
+  sci-libs/mumps: prefix love
+
+  13 Mar 2012; Sébastien Fabbro <bicatali@gentoo.org> mumps-4.10.0.ebuild,
+  metadata.xml:
+  Fixed for sequential (non mpi) libraries
+
+  12 Mar 2012; Sébastien Fabbro <bicatali@gentoo.org> mumps-4.10.0.ebuild:
+  Only allow earlier parmetis versions
+
+  12 Mar 2012; Sébastien Fabbro <bicatali@gentoo.org> +mumps-4.10.0.ebuild,
+  +metadata.xml:
+  metis-mpi is now parmetis
+
+*mumps-4.10.0 (01 Jun 2011)
+
+  01 Jun 2011; Sébastien Fabbro <bicatali@gentoo.org> +mumps-4.10.0.ebuild,
+  +metadata.xml:
+  Initial import
diff --git a/sci-libs/mumps/Manifest b/sci-libs/mumps/Manifest
new file mode 100644
index 000000000000..3c7bf2ec4f6e
--- /dev/null
+++ b/sci-libs/mumps/Manifest
@@ -0,0 +1,4 @@
+DIST MUMPS_4.10.0.tar.gz 2481516 SHA256 d0f86f91a74c51a17a2ff1be9c9cee2338976f13a6d00896ba5b43a5ca05d933 SHA512 348df048618ea2086fbe805a90f2e31f57e0db4aa6f4843a0e3c7142bac80fe45e54768e65921657c970bc286b59c2bca91e5006ed8000678f26ba2efe2bfda8 WHIRLPOOL 268a22811395b0a193eed90798ede8bc1a1478da25354711fbc8a220b5cfc3af78e0aedff787deb1592871ff450835533e1266393592056228fa8685f51f13fd
+EBUILD mumps-4.10.0.ebuild 5595 SHA256 06f8eb7841005cca9d43e580c4966b9c279d3e3d7d207d304fd9307085a4759a SHA512 a34f67b24072c2248a0b4178b7da9cc149100501aabaa4cc12971caf8810ee03e9c3eec6c6e0c7d0875b73f26f5ed59a0e87800a296d015ef822a0874472f6f6 WHIRLPOOL 895b7045ba51a75f9585d3da3c219911cf39d1c49d20068d8bbbda0ffab0a59422a6f50576fc0b6fd9e777df6a241e462efaec6fcd025f3f1f0def8319551eaf
+MISC ChangeLog 1755 SHA256 8487d5d2f14280f1a16078083eb2cf629b8859cf753a91ca3d08f1f2a91860a7 SHA512 f2610a5694f15af063e11919d65d09dcd059d4a1f6a0b8d8aafcce84967c52f2139e6b1dedea86903761008f2e6ac34e3b2a0bc8134cdb55e51a1408da1d773e WHIRLPOOL 14bd21dbcd2fb3d5f763a4e0ebd695418df255641b187ed60825d767dff54c08b24c03f0a181ecc94c26b80798246abd8af118530f19d3ac3848be85c08a2491
+MISC metadata.xml 769 SHA256 c8f2460dd79bcca4712582e6c732553e46af497cb045455c9ef7a258ee9d61d1 SHA512 7c9e0dd1cedfde3b7cbd2a7a59310d9b666ccd44dbf3ad56682c4d3de2c7f320ffdeda05251bbf5aae066395bbbd2332cbcf1e38fa11fdb6a7275ca43331b466 WHIRLPOOL 710f613edd76ef11f2fdef0c018d0f75af1cc4ffe8cc970ca5230a459a2f4d7ba61bdc48eed6b05d619b1bb339f4f201369e89121ef6e94b73c8a53dc4886789
diff --git a/sci-libs/mumps/metadata.xml b/sci-libs/mumps/metadata.xml
new file mode 100644
index 000000000000..3aa8aad22ee4
--- /dev/null
+++ b/sci-libs/mumps/metadata.xml
@@ -0,0 +1,18 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci</herd>
+<longdescription lang='en'>
+  MUltifrontal Massively Parallel sparse direct Solver implements a
+  direct solver for large sparse linear systems, with a particular
+  focus on symmetric positive definite matrices. It can operate on
+  distributed matrices e.g. over a cluster. It has Fortran and C
+  interfaces, and can interface with ordering tools such 
+  as Scotch or Metis.
+</longdescription>
+<use>
+  <flag name="metis">Enable matrix ordering with METIS
+  (<pkg>sci-libs/metis</pkg>, <pkg>sci-libs/parmetis</pkg>)</flag>
+  <flag name="scotch">Enable matrix ordering with <pkg>sci-libs/scotch</pkg></flag>
+</use>
+</pkgmetadata>
diff --git a/sci-libs/mumps/mumps-4.10.0.ebuild b/sci-libs/mumps/mumps-4.10.0.ebuild
new file mode 100644
index 000000000000..d14e0f008210
--- /dev/null
+++ b/sci-libs/mumps/mumps-4.10.0.ebuild
@@ -0,0 +1,185 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/mumps/mumps-4.10.0.ebuild,v 1.1 2014/01/14 18:47:26 bicatali Exp $
+
+EAPI=5
+
+inherit eutils toolchain-funcs flag-o-matic versionator fortran-2 multilib
+
+MYP=MUMPS_${PV}
+
+DESCRIPTION="MUltifrontal Massively Parallel sparse direct matrix Solver"
+HOMEPAGE="http://mumps.enseeiht.fr/"
+SRC_URI="${HOMEPAGE}${MYP}.tar.gz"
+
+LICENSE="public-domain"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="doc examples metis mpi +scotch static-libs"
+
+RDEPEND="
+	virtual/blas
+	metis? ( || ( sci-libs/metis <sci-libs/parmetis-4 )
+		mpi? ( <sci-libs/parmetis-4 ) )
+	scotch? ( sci-libs/scotch[mpi=] )
+	mpi? ( sci-libs/scalapack )"
+
+DEPEND="${RDEPEND}
+	virtual/pkgconfig"
+
+S="${WORKDIR}/${MYP}"
+
+static_to_shared() {
+	local libstatic=${1}; shift
+	local libname=$(basename ${libstatic%.a})
+	local soname=${libname}$(get_libname $(get_version_component_range 1-2))
+	local libdir=$(dirname ${libstatic})
+
+	einfo "Making ${soname} from ${libstatic}"
+	if [[ ${CHOST} == *-darwin* ]] ; then
+		${LINK:-$(tc-getCC)} ${LDFLAGS}  \
+			-dynamiclib -install_name "${EPREFIX}"/usr/lib/"${soname}" \
+			-Wl,-all_load -Wl,${libstatic} \
+			"$@" -o ${libdir}/${soname} || die "${soname} failed"
+	else
+		${LINK:-$(tc-getCC)} ${LDFLAGS}  \
+			-shared -Wl,-soname=${soname} \
+			-Wl,--whole-archive ${libstatic} -Wl,--no-whole-archive \
+			"$@" -o ${libdir}/${soname} || die "${soname} failed"
+		[[ $(get_version_component_count) -gt 1 ]] && \
+			ln -s ${soname} ${libdir}/${libname}$(get_libname $(get_major_version))
+		ln -s ${soname} ${libdir}/${libname}$(get_libname)
+	fi
+}
+
+src_prepare() {
+	sed -e "s:^\(CC\s*=\).*:\1$(tc-getCC):" \
+		-e "s:^\(FC\s*=\).*:\1$(tc-getFC):" \
+		-e "s:^\(FL\s*=\).*:\1$(tc-getFC):" \
+		-e "s:^\(AR\s*=\).*:\1$(tc-getAR) cr :" \
+		-e "s:^\(RANLIB\s*=\).*:\1$(tc-getRANLIB):" \
+		-e "s:^\(LIBBLAS\s*=\).*:\1$($(tc-getPKG_CONFIG) --libs blas):" \
+		-e "s:^\(INCPAR\s*=\).*:\1:" \
+		-e 's:^\(LIBPAR\s*=\).*:\1$(SCALAP):' \
+		-e "s:^\(OPTF\s*=\).*:\1${FFLAGS} -DALLOW_NON_INIT \$(PIC):" \
+		-e "s:^\(OPTC\s*=\).*:\1${CFLAGS} \$(PIC):" \
+		-e "s:^\(OPTL\s*=\).*:\1${LDFLAGS}:" \
+		Make.inc/Makefile.inc.generic > Makefile.inc || die
+	# fixed a missing copy of libseq to libdir
+}
+
+src_configure() {
+	LIBADD="$($(tc-getPKG_CONFIG) --libs blas) -Llib -lpord"
+	local ord="-Dpord"
+	if use metis && use mpi; then
+		sed -i \
+			-e "s:#\s*\(LMETIS\s*=\).*:\1$($(tc-getPKG_CONFIG) --libs parmetis):" \
+			-e "s:#\s*\(IMETIS\s*=\).*:\1$($(tc-getPKG_CONFIG) --cflags parmetis):" \
+			Makefile.inc || die
+		LIBADD="${LIBADD} $($(tc-getPKG_CONFIG) --libs parmetis)"
+		ord="${ord} -Dparmetis"
+	elif use metis; then
+		sed -i \
+			-e "s:#\s*\(LMETIS\s*=\).*:\1$($(tc-getPKG_CONFIG) --libs metis):" \
+			-e "s:#\s*\(IMETIS\s*=\).*:\1$($(tc-getPKG_CONFIG) --cflags metis):" \
+			Makefile.inc || die
+		LIBADD="${LIBADD} $($(tc-getPKG_CONFIG) --libs metis)"
+		ord="${ord} -Dmetis"
+	fi
+	if use scotch && use mpi; then
+		sed -i \
+			-e "s:#\s*\(LSCOTCH\s*=\).*:\1-lptesmumps -lptscotch -lptscotcherr:" \
+			-e "s:#\s*\(ISCOTCH\s*=\).*:\1-I${EROOT}usr/include/scotch:" \
+			Makefile.inc || die
+		LIBADD="${LIBADD} -lptesmumps -lptscotch -lptscotcherr"
+		ord="${ord} -Dptscotch"
+	elif use scotch; then
+		sed -i \
+			-e "s:#\s*\(LSCOTCH\s*=\).*:\1-lesmumps -lscotch -lscotcherr:" \
+			-e "s:#\s*\(ISCOTCH\s*=\).*:\1-I${EROOT}usr/include/scotch:" \
+			Makefile.inc || die
+		LIBADD="${LIBADD} -lesmumps -lscotch -lscotcherr"
+		ord="${ord} -Dscotch"
+	fi
+	if use mpi; then
+		sed -i \
+			-e "s:^\(CC\s*=\).*:\1mpicc:" \
+			-e "s:^\(FC\s*=\).*:\1mpif90:" \
+			-e "s:^\(FL\s*=\).*:\1mpif90:" \
+			-e "s:^\(SCALAP\s*=\).*:\1$($(tc-getPKG_CONFIG) --libs scalapack):" \
+			Makefile.inc || die
+		export LINK=mpif90
+		LIBADD="${LIBADD} $($(tc-getPKG_CONFIG) --libs scalapack)"
+	else
+		sed -i \
+			-e 's:-Llibseq:-L$(topdir)/libseq:' \
+			-e 's:PAR):SEQ):g' \
+			-e "s:^\(SCALAP\s*=\).*:\1:" \
+			-e 's:^LIBSEQNEEDED =:LIBSEQNEEDED = libseqneeded:g' \
+			Makefile.inc || die
+		export LINK="$(tc-getFC)"
+	fi
+	sed -i -e "s:^\s*\(ORDERINGSF\s*=\).*:\1 ${ord}:" Makefile.inc || die
+}
+
+src_compile() {
+	# Workaround #462602
+	export FAKEROOTKEY=1
+
+	# -j1 because of static archive race
+	emake -j1 alllib PIC="-fPIC"
+	if ! use mpi; then
+		#$(tc-getAR) crs lib/libmumps_common.a libseq/*.o || die
+		LIBADD+=" -Llibseq -lmpiseq"
+		static_to_shared libseq/libmpiseq.a
+	fi
+	static_to_shared lib/libpord.a ${LIBADD}
+	static_to_shared lib/libmumps_common.a ${LIBADD}
+
+	local i
+	for i in c d s z; do
+		static_to_shared lib/lib${i}mumps.a -Llib -lmumps_common ${LIBADD}
+	done
+	if use static-libs; then
+		emake clean
+		emake -j1 alllib
+	fi
+}
+
+src_test() {
+	emake all
+	local dotest
+	if use mpi; then
+		dotest="mpirun -np 2"
+	else
+		export LD_LIBRARY_PATH="${S}/libseq:${LD_LIBRARY_PATH}"
+	fi
+	cd examples
+	${dotest} ./ssimpletest < input_simpletest_real || die
+	${dotest} ./dsimpletest < input_simpletest_real || die
+	${dotest} ./csimpletest < input_simpletest_cmplx || die
+	${dotest} ./zsimpletest < input_simpletest_cmplx || die
+	einfo "The solutions should be close to (1,2,3,4,5)"
+	${dotest} ./c_example || die
+	einfo "The solution should be close to (1,2)"
+	make clean
+}
+
+src_install() {
+	dolib.so lib/lib*$(get_libname)*
+	use static-libs && dolib.a lib/lib*.a
+	insinto /usr
+	doins -r include
+	if ! use mpi; then
+		dolib.so libseq/lib*$(get_libname)*
+		insinto /usr/include/mpiseq
+		doins libseq/*.h
+		use static-libs && dolib.a libseq/libmpiseq.a
+	fi
+	dodoc README ChangeLog VERSION
+	use doc && dodoc doc/*.pdf
+	if use examples; then
+		insinto /usr/share/doc/${PF}
+		doins -r examples
+	fi
+}