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Diffstat (limited to 'sci-chemistry/ccpn/ccpn-2.1.5_p101104.ebuild')
-rw-r--r--sci-chemistry/ccpn/ccpn-2.1.5_p101104.ebuild221
1 files changed, 0 insertions, 221 deletions
diff --git a/sci-chemistry/ccpn/ccpn-2.1.5_p101104.ebuild b/sci-chemistry/ccpn/ccpn-2.1.5_p101104.ebuild
deleted file mode 100644
index 5e9633241fb0..000000000000
--- a/sci-chemistry/ccpn/ccpn-2.1.5_p101104.ebuild
+++ /dev/null
@@ -1,221 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.1.5_p101104.ebuild,v 1.1 2010/11/04 21:56:29 jlec Exp $
-
-EAPI="3"
-
-PYTHON_DEPEND="2:2.5"
-SUPPORT_PYTHON_ABIS="1"
-PYTHON_USE_WITH="ssl tk"
-RESTRICT_PYTHON_ABIS="2.4 3.*"
-
-inherit eutils portability python toolchain-funcs versionator
-
-PATCHSET="${PV##*_p}"
-MY_PN="${PN}mr"
-MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
-MY_MAJOR="$(get_version_component_range 1-3)"
-
-DESCRIPTION="The Collaborative Computing Project for NMR"
-SRC_URI="http://www.bio.cam.ac.uk/ccpn/download/${MY_PN}/analysis${MY_PV}.tar.gz"
- [[ -n ${PATCHSET} ]] && SRC_URI="${SRC_URI} http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${PATCHSET}.patch.bz2"
-HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
-
-SLOT="0"
-LICENSE="|| ( CCPN LGPL-2.1 )"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="extendnmr +opengl"
-
-RDEPEND="
- dev-lang/tk[threads]
- >=dev-python/numpy-1.4
- >=dev-tcltk/tix-8.4.3
- =sci-libs/ccpn-data-"${MY_MAJOR}"*
- x11-libs/libXext
- x11-libs/libX11
- extendnmr? (
- sci-chemistry/aria
- sci-chemistry/prodecomp )
- opengl? (
- media-libs/freeglut
- dev-python/pyglet )"
-# We need to fix this
-# sci-chemistry/mdd
-DEPEND="${RDEPEND}"
-
-RESTRICT="mirror"
-S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2 ${PV})
-
-src_prepare() {
- [[ -n ${PATCHSET} ]] && \
- epatch "${WORKDIR}"/ccpn-update-${PATCHSET}.patch
-
- epatch "${FILESDIR}"/${MY_PV}-parallel.patch
-
- local tk_ver
- local myconf
-
- tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
-
- if use opengl; then
- GLUT_NEED_INIT="-DNEED_GLUT_INIT"
- IGNORE_GL_FLAG=""
- GL_FLAG="-DUSE_GL_FALSE"
- GL_DIR="${EPREFIX}/usr"
- GL_LIB="-lglut -lGLU -lGL"
- GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
- GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
-
- else
- IGNORE_GL_FLAG="-DIGNORE_GL"
- GL_FLAG="-DUSE_GL_FALSE"
- fi
-
- GLUT_NOT_IN_GL=""
- GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
-
- rm -rf data model doc license || die
- python_copy_sources
-
- preparation() {
- sed \
- -e "s:/usr:${EPREFIX}/usr:g" \
- -e "s:^\(CC =\).*:\1 $(tc-getCC):g" \
- -e "s:^\(OPT_FLAG =\).*:\1 ${CFLAGS}:g" \
- -e "s:^\(LINK_FLAGS =.*\):\1 ${LDFLAGS}:g" \
- -e "s:^\(IGNORE_GL_FLAG =\).*:\1 ${IGNORE_GL_FLAG}:g" \
- -e "s:^\(GL_FLAG =\).*:\1 ${GL_FLAG}:g" \
- -e "s:^\(GL_DIR =\).*:\1 ${GL_DIR}:g" \
- -e "s:^\(GL_LIB =\).*:\1 ${GL_LIB}:g" \
- -e "s:^\(GL_LIB_FLAGS =\).*:\1 ${GL_LIB_FLAGS}:g" \
- -e "s:^\(GL_INCLUDE_FLAGS =\).*:\1 ${GL_INCLUDE_FLAGS}:g" \
- -e "s:^\(GLUT_NEED_INIT =\).*:\1 ${GLUT_NEED_INIT}:g" \
- -e "s:^\(GLUT_NOT_IN_GL =\).*:\1:g" \
- -e "s:^\(X11_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
- -e "s:^\(TCL_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
- -e "s:^\(TK_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
- -e "s:^\(PYTHON_INCLUDE_FLAGS =\).*:\1 -I\$(PYTHON_DIR)/include/python$(python_get_version):g" \
- -e "s:^\(PYTHON_LIB =\).*:\1 -lpython$(python_get_version):g" \
- c/environment_default.txt > c/environment.txt
- }
- python_execute_function -s preparation
-}
-
-src_compile() {
- building() {
- emake -C c all links
- }
- python_execute_function -s building
-}
-
-src_install() {
- local libdir
- local tkver
- local _wrapper
-
- find . -name "*.pyc" -type d -delete
-
- libdir=$(get_libdir)
- tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
-
- _wrapper="analysis dangle dataShifter depositionFileImporter eci formatConverter pipe2azara"
- use extendnmr && _wrapper="${_wrapper} extendNmr"
- for wrapper in ${_wrapper}; do
- sed \
- -e "s:gentoo_sitedir:${EPREFIX}$(python_get_sitedir -f):g" \
- -e "s:gentoolibdir:${EPREFIX}/usr/${libdir}:g" \
- -e "s:gentootk:${EPREFIX}/usr/${libdir}/tk${tkver}:g" \
- -e "s:gentootcl:${EPREFIX}/usr/${libdir}/tclk${tkver}:g" \
- -e "s:gentoopython:${EPREFIX}/usr/bin/python:g" \
- -e "s://:/:g" \
- "${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
- dobin "${T}"/${wrapper} || die "Failed to install ${wrapper}"
- done
-
- installation() {
- local in_path
- local files
- local pydocs
-
- pydocs="$(find python -name doc -type d)"
- rm -rf ${pydocs} || die
-
- in_path=$(python_get_sitedir)/${PN}
-
- for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
- sed \
- -e 's:#from __future__:from __future__:g' \
- -i ${i} || die
- done
-
- insinto ${in_path}
-
- dodir ${in_path}/c
-
- ebegin "Installing main files"
- doins -r python || die "main files installation failed"
- eend
-
- dosym ../../../..//share/doc/ccpn-data-${MY_MAJOR}/html ${in_path}/doc || die
- for i in ${pydocs}; do
- dosym /usr/share/doc/ccpn-data-${MY_MAJOR}/html/${i} ${in_path}/${i}
- done
-
- dosym /usr/share/ccpn/data ${in_path}/data
- dosym /usr/share/ccpn/model ${in_path}/model
-
- einfo "Adjusting permissions"
-
- files="
- cambridge/c/BayesPeakSeparator.so
- ccp/c/StructUtil.so
- ccp/c/StructStructure.so
- ccp/c/StructBond.so
- ccp/c/StructAtom.so
- ccpnmr/c/DyAtomCoord.so
- ccpnmr/c/DyDistConstraint.so
- ccpnmr/c/DyDistForce.so
- ccpnmr/c/AtomCoordList.so
- ccpnmr/c/DyAtomCoordList.so
- ccpnmr/c/ContourStyle.so
- ccpnmr/c/ContourLevels.so
- ccpnmr/c/SliceFile.so
- ccpnmr/c/PeakCluster.so
- ccpnmr/c/Dynamics.so
- ccpnmr/c/Bacus.so
- ccpnmr/c/Midge.so
- ccpnmr/c/DyDistConstraintList.so
- ccpnmr/c/WinPeakList.so
- ccpnmr/c/PeakList.so
- ccpnmr/c/DistConstraint.so
- ccpnmr/c/CloudUtil.so
- ccpnmr/c/DistForce.so
- ccpnmr/c/DistConstraintList.so
- ccpnmr/c/AtomCoord.so
- ccpnmr/c/DyDynamics.so
- ccpnmr/c/ContourFile.so
- memops/c/ShapeFile.so
- memops/c/BlockFile.so
- memops/c/PdfHandler.so
- memops/c/MemCache.so
- memops/c/FitMethod.so
- memops/c/PsHandler.so
- memops/c/GlHandler.so
- memops/c/StoreFile.so
- memops/c/StoreHandler.so
- memops/c/TkHandler.so"
-
- for FILE in ${files}; do
- fperms 755 ${in_path}/python/${FILE}
- done
- }
- python_execute_function -s installation
-}
-
-pkg_postinst() {
- python_mod_optimize ${PN}
-}
-
-pkg_postrm() {
- python_mod_cleanup ${PN}
-}