diff options
Diffstat (limited to 'sci-libs/cctbx/cctbx-2010.03.29.2334-r2.ebuild')
| -rw-r--r-- | sci-libs/cctbx/cctbx-2010.03.29.2334-r2.ebuild | 185 |
1 files changed, 185 insertions, 0 deletions
diff --git a/sci-libs/cctbx/cctbx-2010.03.29.2334-r2.ebuild b/sci-libs/cctbx/cctbx-2010.03.29.2334-r2.ebuild new file mode 100644 index 000000000000..ebc1b2b4849a --- /dev/null +++ b/sci-libs/cctbx/cctbx-2010.03.29.2334-r2.ebuild @@ -0,0 +1,185 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-libs/cctbx/cctbx-2010.03.29.2334-r2.ebuild,v 1.1 2010/09/12 08:44:48 jlec Exp $ + +EAPI="3" + +PYTHON_DEPEND="2" + +inherit eutils python toolchain-funcs + +MY_PV="${PV//./_}" + +DESCRIPTION="Computational Crystallography Toolbox" +HOMEPAGE="http://cctbx.sourceforge.net/" +SRC_URI="http://cci.lbl.gov/cctbx_build/results/${MY_PV}/${PN}_bundle.tar.gz -> ${P}.tar.gz" + +LICENSE="cctbx-2.0" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="+minimal openmp threads" + +RDEPEND=" + >dev-libs/boost-1.39 + sci-libs/fftw + !minimal? ( + sci-chemistry/cns + sci-chemistry/shelx )" +DEPEND="${RDEPEND} + >=dev-util/scons-1.2" + +S="${WORKDIR}" +MY_S="${WORKDIR}"/cctbx_sources +MY_B="${WORKDIR}"/cctbx_build + +pkg_setup() { + if use openmp && + [[ $(tc-getCC)$ == *gcc* ]] && + ( [[ $(gcc-major-version)$(gcc-minor-version) -lt 42 ]] || + ! built_with_use sys-devel/gcc openmp ) + then + ewarn "You are using gcc and OpenMP is only available with gcc >= 4.2 " + ewarn "If you want to build ${PN} with OpenMP, abort now," + ewarn "and switch CC to an OpenMP capable compiler" + fi + python_set_active_version 2 +} + +src_prepare() { + local opts + local optsld + + epatch "${FILESDIR}"/${PV}-tst_server.py.patch + epatch "${FILESDIR}"/${PV}-boost.patch + epatch "${FILESDIR}"/${PV}-clipper.patch + epatch "${FILESDIR}"/${PV}-flags.patch + epatch "${FILESDIR}"/${PV}-soname.patch + + rm -rf "${MY_S}/scons" "${MY_S}/boost" "${MY_S}/PyCifRW" + find "${MY_S}/clipper" -name "*.h" -delete + + echo "import os, sys; os.execvp('scons', sys.argv)" > "${MY_S}"/libtbx/command_line/scons.py +} + +src_configure() { + local compiler + local myconf + + myconf="${MY_S}/libtbx/configure.py" + + compiler=$(expr match "$(tc-getCC)" '.*\([a-z]cc\)') + myconf="${myconf} --compiler=${compiler}" + + # Additional USE flag usage + check_use openmp + myconf="${myconf} --enable-openmp-if-possible=${USE_openmp}" + + use threads && USEthreads="--enable-boost-threads" && \ + ewarn "If using boost threads openmp support is disabled" + + myconf="${myconf} ${USE_threads} --scan-boost --use_environment_flags" + + mkdir "${MY_B}" && myconf="${myconf} --current_working_directory=${MY_B}" + cd "${MY_B}" + + myconf="${myconf} --build=release fftw3tbx rstbx smtbx mmtbx clipper_adaptbx fable" + einfo "configuring with ${python} ${myconf}" + + $(PYTHON) ${myconf} || die "configure failed" +} + +src_compile() { + local makeopts_exp + + cd "${MY_B}" + + makeopts_exp=${MAKEOPTS/j/j } + makeopts_exp=${makeopts_exp%-l[0-9]*} + + source setpaths_all.sh + + einfo "compiling with libtbx.scons ${makeopts_exp}" + libtbx.scons ${makeopts_exp} .|| die "make failed" +} + +src_test(){ + source "${MY_B}"/setpaths_all.sh + libtbx.python $(libtbx.show_dist_paths boost_adaptbx)/tests/tst_rational.py && \ + libtbx.python ${SCITBX_DIST}/run_tests.py ${MAKEOPTS_EXP} && \ + libtbx.python ${CCTBX_DIST}/run_tests.py ${MAKEOPTS_EXP} \ + || die "test failed" +} + +src_install(){ +# find cctbx_build/ -type f \( -name "*.py" -o -name "*sh" \) -exec \ +# sed -e "s:${MY_S}:${EPREFIX}/usr/$(get_libdir)/cctbx/cctbx_sources:g" \ +# -e "s:${MY_B}:${EPREFIX}/usr/$(get_libdir)/cctbx/cctbx_build:g" \ +# -i '{}' \; || die "Fail to correct path" + + ebegin "removing unnessary files" + rm -r "${S}"/cctbx_sources/{clipper,ccp4io,ucs-fonts,TAG} || die "failed to remove uneeded scons" + find "${S}" -type f -name "*conftest*" -delete || die "failed to remove uneeded *.o" + find "${S}" -type f -name "*.o" -delete || die "failed to remove uneeded *.o" + find "${S}" -type f -name "*.c" -delete || die "failed to remove uneeded *.c" + find "${S}" -type f -name "*.f" -delete || die "failed to remove uneeded *.c" + find "${S}" -type f -name "*.cpp" -delete || die "failed to remove uneeded *.cpp" + find "${S}" -type f -name "*.pyc" -delete || die "failed to remove uneeded *.pyc" + find "${S}" -type f -name "SCons*" -delete || die "failed to remove uneeded *.pyc" + find "${S}" -type f -name "Makefile" -delete || die "failed to remove uneeded *.pyc" + find "${S}" -type f -name "config.log" -delete || die "failed to remove uneeded *.pyc" + find "${S}" -type d -empty -delete || die + find ${MY_B} -maxdepth 1 -type f + find ${MY_B} -maxdepth 1 -type f -delete + eend + + dobin ${MY_B}/bin/* || die + rm -rf ${MY_B}/bin + dolib.so ${MY_B}/lib/lib* || die + rm -f ${MY_B}/lib/lib* + + insinto /usr/include + doins -r ${MY_B}/include/* || die + rm -rf ${MY_B}/include + + insinto /usr/libexec/${PN} + doins -r ${MY_B}/* || die + find "${ED}"/usr/libexec/${PN} -type f -exec chmod 755 '{}' \; + + cd ${MY_S} + insinto $(python_get_sitedir) + doins -r * || die + exeinto $(python_get_sitedir) + doexe ${MY_B}/lib/* || die + rm -rvf ${MY_B}/lib + + sed \ + -e "/PYTHONPATH/s:${MY_S}:$(python_get_sitedir):g" \ + -e "/PYTHONPATH/s:${MY_B}:$(python_get_sitedir):g" \ + -e "/LD_LIBRARY_PATH/s:${MY_B}/lib:${EPREFIX}/usr/$(get_libdir):g" \ + -e "/PATH/s:${MY_B}/bin:${EPREFIX}/usr/bin:g" \ + -e "/PATH/s:${MY_B}/exe:${EPREFIX}/usr/bin:g" \ + -e "/exec/s:${MY_S}:$(python_get_sitedir):g" \ + -e "/LIBTBX_BUILD/s:${MY_B}:/usr:g" \ + -i "${ED}"/usr/bin/* || die + +} + +pkg_postinst () { + python_need_rebuild + python_mod_optimize boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx chiltbx clipper_adaptbx crys3d fable fftw3tbx gltbx iotbx libtbx mmtbx omptbx rstbx scitbx smtbx spotfinder tntbx +} + +pkg_postrm () { + python_mod_cleanup boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx chiltbx clipper_adaptbx crys3d fable fftw3tbx gltbx iotbx libtbx mmtbx omptbx rstbx scitbx smtbx spotfinder tntbx +} + +check_use() { + for var in $@; do + if use ${var}; then + printf -v "USE_$var" True + else + printf -v "USE_$var" False + fi + shift + done +} |