dev-python/spikeinterface: treeclean

Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

4 files changed, 0 insertions, 207 deletions

diff --git a/dev-python/spikeinterface/Manifest b/dev-python/spikeinterface/Manifest
deleted file mode 100644
index 28ed71b4c..000000000
--- a/dev-python/spikeinterface/Manifest
+++ /dev/null
@@ -1,2 +0,0 @@
-DIST spikeinterface-0.96.1.tar.gz 1596455 BLAKE2B 52b5d4f0b435433396e7d06b9a2ed83646280ebefb1f62f179f068a060f43898a822e41bf1500ec53087ad5410ee060806f415988606b0197d13d7a671a5603a SHA512 12de90a8d27e900489d36d0ca14edaac3d1abab1a29f0c41ff1d1648fbf11be09c6c01cb0bd1cc4e1d00a81303fab5ffcb4de596ae69be9508e0503edab768ef
-DIST spikeinterface-0.97.0.tar.gz 6735715 BLAKE2B c11bee4306f8d96ae5cd09cf1b852e267c1db6caa13565f6364cd65ee36fe62c04589e8e0657517003ed1dd6d76d25f60bef226820403111db4ed7717e8a20cd SHA512 befdf3382de6aad2ef2c72e3bbdf64fbee1c1f72f83610ca8bba2f8693992c84b515f8c000dc6b3609825347b0bcd85b026747633e90777d7fdd30dc0ae0ef13
diff --git a/dev-python/spikeinterface/metadata.xml b/dev-python/spikeinterface/metadata.xml
deleted file mode 100644
index f91c7a26c..000000000
--- a/dev-python/spikeinterface/metadata.xml
+++ /dev/null
@@ -1,19 +0,0 @@
-<?xml version='1.0' encoding='UTF-8'?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="person">
-		<email>gentoo@chymera.eu</email>
-		<name>Horea Christian</name>
-	</maintainer>
-	<maintainer type="project">
-		<email>sci@gentoo.org</email>
-		<name>Gentoo Science Project</name>
-	</maintainer>
-	<use>
-		<flag name="extractors">support for all extractors</flag>
-		<flag name="full">support for all optional processing features</flag>
-	</use>
-	<upstream>
-		<remote-id type="github">SpikeInterface/spikeinterface</remote-id>
-	</upstream>
-</pkgmetadata>
diff --git a/dev-python/spikeinterface/spikeinterface-0.96.1.ebuild b/dev-python/spikeinterface/spikeinterface-0.96.1.ebuild
deleted file mode 100644
index 6dae8d191..000000000
--- a/dev-python/spikeinterface/spikeinterface-0.96.1.ebuild
+++ /dev/null
@@ -1,93 +0,0 @@
-# Copyright 2021-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{10..10} )
-DISTUTILS_USE_PEP517=setuptools
-inherit distutils-r1
-
-DESCRIPTION="A Python-based module for creating flexible and robust spike sorting pipelines."
-HOMEPAGE="https://github.com/SpikeInterface/spikeinterface"
-SRC_URI="https://github.com/SpikeInterface/spikeinterface/archive/refs/tags/${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE="extractors full test"
-
-RDEPEND="
-	dev-python/joblib[${PYTHON_USEDEP}]
-	dev-python/neo[${PYTHON_USEDEP}]
-	dev-python/numpy[${PYTHON_USEDEP}]
-	dev-python/probeinterface[${PYTHON_USEDEP}]
-	dev-python/threadpoolctl[${PYTHON_USEDEP}]
-	dev-python/tqdm[${PYTHON_USEDEP}]
-	extractors? (
-		dev-python/pynwb[${PYTHON_USEDEP}]
-		dev-python/lxml[${PYTHON_USEDEP}]
-		dev-python/scipy[${PYTHON_USEDEP}]
-	)
-	full? (
-		dev-python/distinctipy[${PYTHON_USEDEP}]
-		dev-python/h5py[${PYTHON_USEDEP}]
-		dev-python/matplotlib[${PYTHON_USEDEP}]
-		dev-python/networkx[${PYTHON_USEDEP}]
-		dev-python/pandas[${PYTHON_USEDEP}]
-		dev-python/scipy[${PYTHON_USEDEP}]
-		dev-python/xarray[${PYTHON_USEDEP}]
-		dev-python/zarr[${PYTHON_USEDEP}]
-		sci-libs/scikit-learn[${PYTHON_USEDEP}]
-	)
-"
-# Also wants:
-# # Extractors:
-# 	MEArec
-# 	pyedflib
-# 	sonpy
-# 	dev-python/hdf5storage (in ::science, masked)
-
-distutils_enable_tests pytest
-
-# Test failures reported upstream:
-# https://github.com/SpikeInterface/spikeinterface/issues/307
-python_test() {
-	# Network sandboxing, mostly (?)
-	local EPYTEST_DESELECT=(
-		spikeinterface/core/tests/test_datasets.py::test_download_dataset
-		spikeinterface/sortingcomponents/tests/test_motion_estimation.py::test_motion_functions
-		spikeinterface/sortingcomponents/tests/test_motion_estimation.py::test_estimate_motion_rigid
-		spikeinterface/sortingcomponents/tests/test_motion_estimation.py::test_estimate_motion_non_rigid
-		spikeinterface/comparison/tests/test_multisortingcomparison.py::test_compare_multiple_sorters
-		spikeinterface/curation/tests/test_sortingview_curation.py::test_sortingview_curation
-		spikeinterface/exporters/tests/test_export_to_phy.py::test_export_to_phy
-		spikeinterface/exporters/tests/test_export_to_phy.py::test_export_to_phy_by_sparsity
-		spikeinterface/exporters/tests/test_report.py::test_export_report
-		spikeinterface/extractors/tests/test_neoextractors.py
-		spikeinterface/sorters/tests/test_launcher.py::test_run_sorters_with_dict
-		spikeinterface/sorters/tests/test_launcher.py::test_sorter_installation
-		spikeinterface/sorters/tests/test_runsorter.py::test_run_sorter_local
-		spikeinterface/sorters/tests/test_runsorter.py::test_run_sorter_docker
-		spikeinterface/sorters/tests/test_runsorter.py::test_run_sorter_singularity
-		spikeinterface/sorters/tests/test_si_based_sorters.py::SpykingCircus2SorterCommonTestSuite
-		spikeinterface/sorters/tests/test_si_based_sorters.py::Tridesclous2SorterCommonTestSuite::test_with_class
-		spikeinterface/sorters/tests/test_si_based_sorters.py::Tridesclous2SorterCommonTestSuite::test_with_run
-		spikeinterface/sortingcomponents/tests/test_clustering.py::test_find_cluster_from_peaks
-		spikeinterface/sortingcomponents/tests/test_features_from_peaks.py::test_features_from_peaks
-		spikeinterface/sortingcomponents/tests/test_peak_detection.py::test_detect_peaks
-		spikeinterface/sortingcomponents/tests/test_peak_localization.py::test_localize_peaks
-		spikeinterface/sortingcomponents/tests/test_peak_pipeline.py::test_run_peak_pipeline
-		spikeinterface/sortingcomponents/tests/test_peak_selection.py::test_detect_peaks
-		spikeinterface/sortingcomponents/tests/test_template_matching.py::test_find_spikes_from_templates
-		spikeinterface/widgets/tests/test_widgets.py::TestWidgets
-	)
-	# Reported upstream:
-	# https://github.com/SpikeInterface/spikeinterface/issues/307#issuecomment-1410840998
-	EPYTEST_DESELECT+=(
-		spikeinterface/sorters/tests/test_launcher.py::test_collect_sorting_outputs
-	)
-	local EPYTEST_IGNORE=(
-		spikeinterface/widgets/_legacy_mpl_widgets/tests/*
-	)
-	epytest
-}
diff --git a/dev-python/spikeinterface/spikeinterface-0.97.0.ebuild b/dev-python/spikeinterface/spikeinterface-0.97.0.ebuild
deleted file mode 100644
index 5c4e65481..000000000
--- a/dev-python/spikeinterface/spikeinterface-0.97.0.ebuild
+++ /dev/null
@@ -1,93 +0,0 @@
-# Copyright 2021-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{10..10} )
-DISTUTILS_USE_PEP517=setuptools
-inherit distutils-r1
-
-DESCRIPTION="A Python-based module for creating flexible and robust spike sorting pipelines."
-HOMEPAGE="https://github.com/SpikeInterface/spikeinterface"
-SRC_URI="https://github.com/SpikeInterface/spikeinterface/archive/refs/tags/${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE="extractors full test"
-
-RDEPEND="
-	dev-python/joblib[${PYTHON_USEDEP}]
-	dev-python/neo[${PYTHON_USEDEP}]
-	dev-python/numpy[${PYTHON_USEDEP}]
-	>=dev-python/probeinterface-0.2.16[${PYTHON_USEDEP}]
-	dev-python/threadpoolctl[${PYTHON_USEDEP}]
-	dev-python/tqdm[${PYTHON_USEDEP}]
-	extractors? (
-		dev-python/pynwb[${PYTHON_USEDEP}]
-		dev-python/lxml[${PYTHON_USEDEP}]
-		dev-python/scipy[${PYTHON_USEDEP}]
-	)
-	full? (
-		dev-python/distinctipy[${PYTHON_USEDEP}]
-		dev-python/h5py[${PYTHON_USEDEP}]
-		dev-python/matplotlib[${PYTHON_USEDEP}]
-		dev-python/networkx[${PYTHON_USEDEP}]
-		dev-python/pandas[${PYTHON_USEDEP}]
-		dev-python/scipy[${PYTHON_USEDEP}]
-		dev-python/xarray[${PYTHON_USEDEP}]
-		dev-python/zarr[${PYTHON_USEDEP}]
-		sci-libs/scikit-learn[${PYTHON_USEDEP}]
-	)
-"
-# Also wants:
-# # Extractors:
-# 	MEArec
-# 	pyedflib
-# 	sonpy
-# 	dev-python/hdf5storage (in ::science, masked)
-
-distutils_enable_tests pytest
-
-# Test failures reported upstream:
-# https://github.com/SpikeInterface/spikeinterface/issues/307
-python_test() {
-	# Network sandboxing, mostly (?)
-	local EPYTEST_DESELECT=(
-		spikeinterface/core/tests/test_datasets.py::test_download_dataset
-		spikeinterface/sortingcomponents/tests/test_motion_estimation.py::test_motion_functions
-		spikeinterface/sortingcomponents/tests/test_motion_estimation.py::test_estimate_motion_rigid
-		spikeinterface/sortingcomponents/tests/test_motion_estimation.py::test_estimate_motion_non_rigid
-		spikeinterface/comparison/tests/test_multisortingcomparison.py::test_compare_multiple_sorters
-		spikeinterface/curation/tests/test_sortingview_curation.py::test_sortingview_curation
-		spikeinterface/exporters/tests/test_export_to_phy.py::test_export_to_phy
-		spikeinterface/exporters/tests/test_export_to_phy.py::test_export_to_phy_by_sparsity
-		spikeinterface/exporters/tests/test_report.py::test_export_report
-		spikeinterface/extractors/tests/test_neoextractors.py
-		spikeinterface/sorters/tests/test_launcher.py::test_run_sorters_with_dict
-		spikeinterface/sorters/tests/test_launcher.py::test_sorter_installation
-		spikeinterface/sorters/tests/test_runsorter.py::test_run_sorter_local
-		spikeinterface/sorters/tests/test_runsorter.py::test_run_sorter_docker
-		spikeinterface/sorters/tests/test_runsorter.py::test_run_sorter_singularity
-		spikeinterface/sorters/tests/test_si_based_sorters.py::SpykingCircus2SorterCommonTestSuite
-		spikeinterface/sorters/tests/test_si_based_sorters.py::Tridesclous2SorterCommonTestSuite::test_with_class
-		spikeinterface/sorters/tests/test_si_based_sorters.py::Tridesclous2SorterCommonTestSuite::test_with_run
-		spikeinterface/sortingcomponents/tests/test_clustering.py::test_find_cluster_from_peaks
-		spikeinterface/sortingcomponents/tests/test_features_from_peaks.py::test_features_from_peaks
-		spikeinterface/sortingcomponents/tests/test_peak_detection.py::test_detect_peaks
-		spikeinterface/sortingcomponents/tests/test_peak_localization.py::test_localize_peaks
-		spikeinterface/sortingcomponents/tests/test_peak_pipeline.py::test_run_peak_pipeline
-		spikeinterface/sortingcomponents/tests/test_peak_selection.py::test_detect_peaks
-		spikeinterface/sortingcomponents/tests/test_template_matching.py::test_find_spikes_from_templates
-		spikeinterface/widgets/tests/test_widgets.py::TestWidgets
-	)
-	# Reported upstream:
-	# https://github.com/SpikeInterface/spikeinterface/issues/307#issuecomment-1410840998
-	EPYTEST_DESELECT+=(
-		spikeinterface/sorters/tests/test_launcher.py::test_collect_sorting_outputs
-	)
-	local EPYTEST_IGNORE=(
-		spikeinterface/widgets/_legacy_mpl_widgets/tests/*
-	)
-	epytest
-}