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* */*: drop py3.8 and py3.9 where py3.10+ already enabledAndrew Ammerlaan2023-01-1221-21/+21
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/torchvision: add 0.14.1, drop 0.11.2Andrew Ammerlaan2023-01-032-11/+12
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/daal4py: add 2021.7.1_p20221209Andrew Ammerlaan2022-12-123-0/+132
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/scikit-learn-intelx: new package, add 2021.7.1Andrew Ammerlaan2022-12-123-0/+55
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/daal4py: new package, add 2021.7.1Andrew Ammerlaan2022-12-124-0/+138
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/oneDAL: new package, add 2021.7.1_p20221207Andrew Ammerlaan2022-12-114-0/+267
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/oneMKL: new package, add 0.2_p20221201Andrew Ammerlaan2022-12-104-0/+93
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/torchvision: drop use cudaAndrew Ammerlaan2022-12-012-12/+1
| | | | | | it has been dropped on pytorch Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* */*: drop dead/outdated intel packages and eclassAndrew Ammerlaan2022-12-015-145/+0
| | | | | | | | | | | | | Unmaintained, does not seem to work any more. sys-devel/DPC++ is the modern oneapi intel C++ compiler replacement for dev-lang/icc There is no modern fortran compiler replacement for dev-lang/ifc Closes: https://github.com/gentoo/sci/pull/1040 Closes: https://github.com/gentoo/sci/pull/780 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* add github remote-id when possibleJérôme Carretero2022-11-158-7/+23
| | | | | | | | Semi-automatically done with: https://gitlab.com/cJ/gentoo-bug-881037-github-reproducible-downloads Closes: https://github.com/gentoo/sci/pull/1182 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/handyg: new package, add 0.1.5Alexander Puck Neuwirth2022-10-315-0/+102
| | | | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de> Closes: https://github.com/gentoo/sci/pull/1175 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/itk: add upstream patch to fix building testsFrançois-Xavier Carton2022-09-302-0/+54
| | | | | | | | | | Needed since commit b6218b "sci-libs/itk: add AdaptiveDenoising module" because the commit used for that remote module is too recent and needs that ITK commit. Signed-off-by: François-Xavier Carton <fx.carton91@gmail.com> Closes: https://github.com/gentoo/sci/pull/1172 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/itk: add AdaptiveDenoising moduleAndrew Ammerlaan2022-09-152-0/+5
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* Revert "sci-libs/itk: add 5.1.0"Andrew Ammerlaan2022-09-155-268/+0
| | | | | | This reverts commit 42b8aadc9ce1de416e55dba98c3ba02a0177366f. Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/itk: add 5.1.0Horea Christian2022-09-155-0/+268
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/itk: drop 5.0.1, 5.1.0Andrew Ammerlaan2022-08-3113-702/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/mlpack: treeclean, more recent version in ::guruAndrew Ammerlaan2022-08-234-259/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/itk: bump to 5.2.1François-Xavier Carton2022-08-236-0/+1108
| | | | | | Signed-off-by: François-Xavier Carton <fx.carton91@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org> Closes: https://github.com/gentoo/sci/pull/1154
* sci-libs/gdcm: new packageFrançois-Xavier Carton2022-08-235-0/+222
| | | | | Signed-off-by: François-Xavier Carton <fx.carton91@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/HDF5Plugin-Zstandard: depend on >=1.12.2-r5.Benda Xu2022-08-181-2/+2
| | | | | | | | 1.12.2-r3 and r4 lost the standard Gentoo plugin directory of hdf5. r5 re-enables it. Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/nipype: purged dangling etelemetry requirementHorea Christian2022-08-091-1/+1
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/nipype: removed superfluous pytest argumentsHorea Christian2022-07-121-1/+1
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/nipype: removed superfluous die callHorea Christian2022-07-121-2/+1
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/itk: EAPI and PYTHON_COMPAT bumpHorea Christian2022-07-122-2/+2
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/nipype: EAPI and PYTHON_COMPAT bump, test fixHorea Christian2022-07-112-4/+41
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/nipy: removed stale live ebuildHorea Christian2022-07-111-54/+0
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/nipy: EAPI/PYTHON_COMPAT bump and restricted testsHorea Christian2022-07-113-5/+60
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/simpleitk: EAPI and PYTHON_COMPAT bumpHorea Christian2022-07-111-3/+3
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/nibabel: dropped deprecated live ebuildHorea Christian2022-07-111-37/+0
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/pybids: dropped version with missing sourceHorea Christian2022-07-112-37/+0
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/pybids: EAPI and PYTHON_COMPAT bumpHorea Christian2022-07-114-29/+15
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/nibabel: dropped version with missing sourcesHorea Christian2022-07-112-43/+0
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/nibabel: EAPI and PYTHON_COMPAT bumpHorea Christian2022-07-113-8/+8
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/bids-validator: EAPI and PYTHON_COMPAT bumpHorea Christian2022-07-111-3/+3
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/labbookdb: PYHTON_COMPAT bump 3.10Horea Christian2022-07-111-3/+3
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/nibabel: enable py3.10 and disable py3.7Sam James2022-07-071-3/+8
| | | | | | See https://projects.gentoo.org/python/guide/distutils.html#running-tests-with-virtualx re virtx. Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/torchvision: depend on pytorch[cuda?]Andrew Ammerlaan2022-07-051-1/+1
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/torchvision: port to ::gentoo version of pytorchAndrew Ammerlaan2022-07-031-4/+1
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/pytorch: moved to ::gentooAndrew Ammerlaan2022-07-0329-1164/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/arpack: new package, add 3.8.0_p20220604Alessandro Barbieri2022-06-123-0/+131
| | | | | | Signed-off-by: Alessandro Barbieri <lssndrbarbieri@gmail.com> Closes: https://github.com/gentoo/sci/pull/1147 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/HDF5Plugin-Zstandard: avoid changing envYuyi Wang2022-06-091-7/+1
| | | | | | | | | | | | This patch syncs with gentoo/gentoo@8e16e74. As the default plugin directory is set to the right value, we don't need to specify the HDF5_PLUGIN_PATH environment variable. This will make our environment clear and less hacky. Closes: https://github.com/gentoo/sci/pull/1146 Signed-off-by: Yuyi Wang <Strawberry_Str@hotmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* */*: virtual/jpeg deprecationAndrew Ammerlaan2022-05-022-2/+2
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/superlu_dist: drop masked packageAndrew Ammerlaan2022-05-023-69/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/pytorch: update to 1.10.2Miezhiko2022-02-242-1/+1
| | | | | | Signed-off-by: Miezhiko <Miezhiko@gmail.com> Closes: https://github.com/gentoo/sci/pull/1145 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/spyking-circus: bump to 1.1.0Andrew Ammerlaan2022-01-312-8/+5
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/clfft: remove underscore from use flagAndrew Ammerlaan2022-01-263-9/+9
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/pg2plplot: bump to 5.13.1Andrew Ammerlaan2022-01-252-11/+12
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/libsufr: bump to 0.7.7Andrew Ammerlaan2022-01-252-5/+4
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/aocl-libm: bump to 3.1.0Andrew Ammerlaan2022-01-252-15/+12
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/libflame-amd: bump to 3.1Andrew Ammerlaan2022-01-252-19/+10
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>