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* sci-libs/gdcm: drop 3.0.14HEADmasterHorea Christian3 days1-121/+0
| | | | | | This version won't compile, needs the patch for revbump from Bug #948517 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/gdcm: version and revbumpHorea Christian3 days3-0/+252
| | | | | | updated PYTHON_COMPAT, marked tests as failing Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/torchaudio: add 2.4.1uis2025-01-103-0/+92
| | | | | Signed-off-by: uis <uis9936@gmail.com> Signed-off-by: Nowa Ammerlaan <nowa@gentoo.org>
* move {sci-libs,dev-python}/scikit-learnPaul Zander2024-12-122-2/+2
| | | | Signed-off-by: Paul Zander <negril.nx+gentoo@gmail.com>
* move {sys-libs,llvm-runtimes}/libcxxPaul Zander2024-12-121-1/+1
| | | | Signed-off-by: Paul Zander <negril.nx+gentoo@gmail.com>
* move {sys-devel,llvm-core}/clangPaul Zander2024-12-121-1/+1
| | | | Signed-off-by: Paul Zander <negril.nx+gentoo@gmail.com>
* sci-libs/mpfun90: add 2024.12.06, 9999Alexander Puck Neuwirth2024-12-063-0/+69
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* sci-libs/mpfun90: change LICENSE to DHBBSDAlexander Puck Neuwirth2024-12-061-2/+2
| | | | | See-also: https://github.com/APN-Pucky/mpfun90/pull/3 Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* sci-libs/starparse: switch to guile eclassAlexander Puck Neuwirth2024-12-041-3/+26
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* sci-libs/rdkit: version bump 2024.09.2Michael Schubert2024-11-162-1/+6
| | | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Closes: https://github.com/gentoo/sci/pull/1300 Signed-off-by: Nowa Ammerlaan <nowa@gentoo.org>
* */*: Rename dev-python/{jinja → jinja2}Alexander Puck Neuwirth2024-11-151-1/+1
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* sci-libs/rdkit: version bump 2024.03.4Michael Schubert2024-10-305-33/+47
| | | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Closes: https://github.com/gentoo/sci/pull/1288 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/torchvision: add 0.19.1, drop oldsYiyang Wu2024-10-305-83/+25
| | | | | | | | | | | | Enable tests. torchvision should be rebuilt if caffe2 turns on/off cuda or rocm. So adding cuda/rocm to USE flag and dependencies to handle this. Reference: https://bugs.gentoo.org/680496 Signed-off-by: Yiyang Wu <xgreenlandforwyy@gmail.com> Closes: https://github.com/gentoo/sci/pull/1293 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/cuba: new package, add 4.2.2Alexander Puck Neuwirth2024-09-243-0/+62
| | | | | | Closes: https://github.com/gentoo/sci/pull/1291 Co-authored-by: Nowa Ammerlaan <andrewammerlaan@gentoo.org> Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* */*: drop distutils_enable_tests --installAndrew Ammerlaan2024-06-171-1/+1
| | | | | | TODO: port these packages to pep517, and fix tests Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* */*: drop sourceforge mirrorAndrew Ammerlaan2024-05-074-5/+5
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/torchvision: add 0.17.1Yiyang Wu2024-03-273-0/+82
| | | | | | | | | | | | | | | | Other changes compared to previous version: 1. Include a patch for ffmpeg 6.0 fix 2. Limit setuptools thread to 1, while ninja respect MAKEOPTS 3. revdump on ffmpeg because video_reader.so links to libavutil libavcodec libavformat 4. Drop dev-qt/qtcore dependency since not needed 5. Drop test support: missing dependency expecttest, problematic import issues: https://github.com/gentoo/sci/pull/1263#issuecomment-2021380600 Signed-off-by: Yiyang Wu <xgreenlandforwyy@gmail.com> Closes: https://github.com/gentoo/sci/pull/1263 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/vegas: new package, add 6.0.1Alexander Puck Neuwirth2024-03-193-0/+44
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* sci-libs/gvar: new package, add 13.0.2Alexander Puck Neuwirth2024-03-193-0/+42
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* sci-libs/spyking-circus: unkeyword 1.1.0 for ~x86Horea Christian2024-02-281-2/+2
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/mpfun90: new package, add 2023.02.26Alexander Puck Neuwirth2024-02-273-0/+48
| | | | | Closes: https://github.com/gentoo/sci/pull/1250 Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* sci-libs/nipy: version bump, removed deprecated versionHorea Christian2024-02-203-53/+38
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/nipype: add 1.8.6, drop 1.5.0Horea Christian2024-01-222-14/+13
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/daal4py: updated cmake dependency categoryHorea Christian2024-01-221-1/+1
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/*: updated dependency nameHorea Christian2024-01-222-2/+2
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/asl: updated dependency nameHorea Christian2024-01-222-2/+2
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/arrayfire: updated dependency nameHorea Christian2024-01-223-3/+3
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/itk: updated dependency nameHorea Christian2024-01-222-2/+2
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/wannier90: remove unused patch(es)Michael Mair-Keimberger2023-12-313-133/+0
| | | | | Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/lib2bit: remove unused patchMichael Mair-Keimberger2023-12-311-11/+0
| | | | | Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/handyg: remove unused patchMichael Mair-Keimberger2023-12-311-22/+0
| | | | | Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/daal4py: remove unused patchesMichael Mair-Keimberger2023-12-312-141/+0
| | | | | Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/nibabel: drop 4.0.0Horea Christian2023-12-112-38/+0
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/nibabel: add 5.1.0Horea Christian2023-12-112-0/+36
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/nipype: PEP517 fixes and revbumpHorea Christian2023-12-113-0/+147
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/oneDAL: add 2023.2.1Andrew Ammerlaan2023-08-223-0/+248
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/pydicom: updated bug referenceHorea Christian2023-05-252-2/+4
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/pydicom: enable py3.12Horea Christian2023-05-252-2/+2
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/pydicom: update HOMEPAGEHorea Christian2023-05-252-2/+2
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/pydicom: add 2.3.1Horea Christian2023-05-222-0/+28
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/pydicom: update SRC_URIHorea Christian2023-05-221-3/+3
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/itk: patch for newer gccHorea Christian2023-05-122-0/+12
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/pydicom: enable py3.11Horea Christian2023-05-101-2/+2
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/pybids: enable py3.11Horea Christian2023-05-023-6/+6
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/bids-validator: enable py3.11Horea Christian2023-05-021-2/+2
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/nipype: enable py3.11Horea Christian2023-05-022-4/+4
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/nipy: enable py3.11Horea Christian2023-05-021-1/+1
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/labbookdb: enable py3.11Horea Christian2023-05-021-2/+2
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/nibabel: enable py3.11Horea Christian2023-05-022-4/+4
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/nibabel: drop 3.2.1Horea Christian2023-05-022-42/+0
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>