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authorJakov Smolić <jsmolic@gentoo.org>2022-08-22 09:58:07 +0200
committerJakov Smolić <jsmolic@gentoo.org>2022-08-22 10:03:27 +0200
commit5ef7d672b0a227dd9d186e39d5ff9ebcdd1198fb (patch)
tree38c6d9dbac879a903a63edfbe3acda3c45fe68e4
parentdev-haskell/bitarray: treeclean (diff)
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dev-haskell/biosff: treeclean
Closes: https://bugs.gentoo.org/720912 Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
-rw-r--r--dev-haskell/biosff/Manifest1
-rw-r--r--dev-haskell/biosff/biosff-0.3.7.1.ebuild36
-rw-r--r--dev-haskell/biosff/files/biosff-0.3.7.1-ghc-7.10.patch7
-rw-r--r--dev-haskell/biosff/metadata.xml18
-rw-r--r--profiles/package.mask1
5 files changed, 0 insertions, 63 deletions
diff --git a/dev-haskell/biosff/Manifest b/dev-haskell/biosff/Manifest
deleted file mode 100644
index 6609aac6d6ee..000000000000
--- a/dev-haskell/biosff/Manifest
+++ /dev/null
@@ -1 +0,0 @@
-DIST biosff-0.3.7.1.tar.gz 26705 BLAKE2B abf585342c14c01a8f202b34ec94e67138e345918b43a52dbf535c3690bca2039c977ee36ebef861d5f215174429f41702e84d440cf52316de0ec82722053f72 SHA512 ce075d734864b9a00999d5c37c824ece5ba475b583536eb842835b4a44ff56581f18ba8ddf065f2ea4416ff4f96279f6a46f5e57330a43d40164f4cabab2ab9f
diff --git a/dev-haskell/biosff/biosff-0.3.7.1.ebuild b/dev-haskell/biosff/biosff-0.3.7.1.ebuild
deleted file mode 100644
index a3d46f863ec0..000000000000
--- a/dev-haskell/biosff/biosff-0.3.7.1.ebuild
+++ /dev/null
@@ -1,36 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-# ebuild generated by hackport 0.6.6.9999
-
-CABAL_FEATURES="lib profile haddock hoogle hscolour"
-inherit haskell-cabal
-
-DESCRIPTION="Library and executables for working with SFF files"
-HOMEPAGE="http://biohaskell.org/"
-SRC_URI="https://hackage.haskell.org/package/${P}/${P}.tar.gz"
-
-LICENSE="LGPL-2.1"
-SLOT="0/${PV}"
-KEYWORDS="~amd64 ~x86"
-IUSE="+fclip +flower +frecover"
-
-RDEPEND=">=dev-haskell/biocore-0.3:=[profile?]
- >=dev-lang/ghc-7.4.1:=
- flower? ( dev-haskell/cmdargs:=[profile?]
- >=dev-haskell/mtl-2:=[profile?] )
-"
-DEPEND="${RDEPEND}
- >=dev-haskell/cabal-1.6
-"
-
-PATCHES=("${FILESDIR}"/${P}-ghc-7.10.patch)
-
-src_configure() {
- haskell-cabal_src_configure \
- $(cabal_flag fclip fclip) \
- $(cabal_flag flower flower) \
- $(cabal_flag frecover frecover)
-}
diff --git a/dev-haskell/biosff/files/biosff-0.3.7.1-ghc-7.10.patch b/dev-haskell/biosff/files/biosff-0.3.7.1-ghc-7.10.patch
deleted file mode 100644
index 48c29358ca7c..000000000000
--- a/dev-haskell/biosff/files/biosff-0.3.7.1-ghc-7.10.patch
+++ /dev/null
@@ -1,7 +0,0 @@
-diff --git a/src/Flower/Main.hs b/src/Flower/Main.hs
-index b0cbd1c..3428db5 100644
---- a/src/Flower/Main.hs
-+++ b/src/Flower/Main.hs
-@@ -1 +1,2 @@
-+{-# LANGUAGE FlexibleContexts #-}
- -- FlowEr - FLOWgram ExtractoR
diff --git a/dev-haskell/biosff/metadata.xml b/dev-haskell/biosff/metadata.xml
deleted file mode 100644
index 1c01edd0aec8..000000000000
--- a/dev-haskell/biosff/metadata.xml
+++ /dev/null
@@ -1,18 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>haskell@gentoo.org</email>
- <name>Gentoo Haskell</name>
- </maintainer>
- <use>
- <flag name="fclip">Build the 'fclip' executable.</flag>
- <flag name="flower">Build the 'flower' executable.</flag>
- <flag name="frecover">Build the 'frecover' executable.</flag>
- </use>
- <longdescription>
- The library contains the functionality for reading and writing
- SFF files (sequencing data from 454 and Ion Torrent). It duplicates
- code from (and is incompatible with) the "bio" library.
- </longdescription>
-</pkgmetadata>
diff --git a/profiles/package.mask b/profiles/package.mask
index 4dc51f8d86d8..57c86c3699ab 100644
--- a/profiles/package.mask
+++ b/profiles/package.mask
@@ -348,7 +348,6 @@ dev-haskell/binary-instances
dev-haskell/binary-tagged
dev-haskell/biocore
dev-haskell/biofasta
-dev-haskell/biosff
# Hans de Graaff <graaff@gentoo.org> (2022-07-16)
# No longer supported upstream. Use a newer ruby version instead.