diff options
author | Justin Lecher <jlec@gentoo.org> | 2015-10-30 13:25:11 +0100 |
---|---|---|
committer | Justin Lecher <jlec@gentoo.org> | 2015-10-30 13:25:11 +0100 |
commit | 820ffc621b5edafd445a0cd434de82f1f904663b (patch) | |
tree | a7c15cb606ccdef30a55933ee6e2b95a8d74cbe6 /dev-lang/R | |
parent | sci-libs/itpp: Drop old (diff) | |
download | gentoo-820ffc621b5edafd445a0cd434de82f1f904663b.tar.gz gentoo-820ffc621b5edafd445a0cd434de82f1f904663b.tar.bz2 gentoo-820ffc621b5edafd445a0cd434de82f1f904663b.zip |
dev-lang/R: Clean old
Package-Manager: portage-2.2.23
Signed-off-by: Justin Lecher <jlec@gentoo.org>
Diffstat (limited to 'dev-lang/R')
-rw-r--r-- | dev-lang/R/Manifest | 6 | ||||
-rw-r--r-- | dev-lang/R/R-3.0.1.ebuild | 206 | ||||
-rw-r--r-- | dev-lang/R/R-3.0.3.ebuild | 203 | ||||
-rw-r--r-- | dev-lang/R/R-3.1.0.ebuild | 206 | ||||
-rw-r--r-- | dev-lang/R/R-3.1.1.ebuild | 206 | ||||
-rw-r--r-- | dev-lang/R/R-3.1.2.ebuild | 206 | ||||
-rw-r--r-- | dev-lang/R/R-3.2.0-r1.ebuild | 207 | ||||
-rw-r--r-- | dev-lang/R/R-3.2.2.ebuild | 2 | ||||
-rw-r--r-- | dev-lang/R/files/R-2.12.1-ldflags.patch | 15 | ||||
-rw-r--r-- | dev-lang/R/files/R-2.14.1-rmath-shared.patch | 24 | ||||
-rw-r--r-- | dev-lang/R/files/R-3.2.0-omitted-extern-R_running_as_main_program.patch | 12 |
11 files changed, 1 insertions, 1292 deletions
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest index be5008e3cd4c..a60e55e5549f 100644 --- a/dev-lang/R/Manifest +++ b/dev-lang/R/Manifest @@ -1,8 +1,2 @@ DIST R-20130129.bash_completion.bz2 4209 SHA256 487e969b94563fec98ec58de7e6142e9361d4219088add0fca282b482a9e01b1 SHA512 910b26e16cfebe677f438abfa5f2652e582db143d91dbf0e7d4b1ea33462c7e5c89c3a3619c63ae98bba26b11a5adb16eda9d344f8cdbe4f0feabc546993c1a5 WHIRLPOOL 2368efaed37fcb6e010f6a234864631f68549bd8e3f733561170cc5b28f5557e546d8561246fb265a481a47991a262fec3acf6abc1dc3929a9357405e0d3c6fc -DIST R-3.0.1.tar.gz 25508280 SHA256 af90488af3141103b211dc81b6f17d1f0faf4f17684c579a32dfeb25d0d87134 SHA512 470edbf4a4fccf9310add110d7fa7f338e410e412b3ec84f6ea5f1253e94a435e185a7a1b62b22aee443293147ff7bcca139015b490a9271a502b1bfbf1426a2 WHIRLPOOL f45c960280f51cba3a4f3730fa79671808b3c07fd49f97b2cdce4a1de45986e62ac9bb24c6f764386a3ef1034a266b86f041a1a1652ec7f687a4db08a074d22e -DIST R-3.0.3.tar.gz 28075821 SHA256 b97cfd9540f294ab786e846153f3dd8605610d7e27616bfb4296795bc4fde6d6 SHA512 881c9c0a8d866eb87218a5cdca72153c9ef0fa0a0f091595fc065bdcbc1ea8b0bd1a2fb3008457b12e1b5025a7e70bd7764de4286a57ad3f73226367b2fc4e83 WHIRLPOOL 076d041c0581dc211a4ee53cf5cad731dc0ece33bbb34f8c066dc660ef0c1f7dcfc1b3359c6a0cebfa2ccec9b689776965a530edcf9f81758c4e003242347225 -DIST R-3.1.0.tar.gz 28469975 SHA256 8a680390f84c58c01dcdefd682eaa0e90389f09e6d2f2e090c71af40065f5fe2 SHA512 bb21fc90c7d37a5328031ed784e7dcbd20259d1837c33db3b51c14a116939a53496683d5de142a1223e89fc12406294efc67bed3595131615e9607d5ffab5ce2 WHIRLPOOL b376180d700d18780eb344b737a3a1bfc8b40f67967032e0f34abf940d76c3ffd7694be9f2f10be985571e8f94d92a6970a3d1cba503280e3fcf6df7a5e4298e -DIST R-3.1.1.tar.gz 28606569 SHA256 ce5c4d5e34414ce8f1ec2d5642861435fa1ddc4cd89bd336172bbe25a62c7a19 SHA512 a75d8b82645bd9486873669b802924448d591013076e3d7dc958502dc6f0dac7d7fb78f3921d34a1eac1383f141b6e800f4293f7fac09651e0176cf84c431af9 WHIRLPOOL ec05c70193a229cbaf15f3432853070c6666c3963a4e2719a6d8ff188bfc2cada0d1f2fe90a9dd6b43f46913138afed0be387ba73b7f9c4d87abc362cc8a5393 -DIST R-3.1.2.tar.gz 28655941 SHA256 bcd150afcae0e02f6efb5f35a6ab72432be82e849ec52ce0bb89d8c342a8fa7a SHA512 fee20cd94d14bd46cc36fb265ed4d64f44eaa3929dd13c62d29a5883fde607aba63e28a4b0f265ede63f78788996deaee36acf6a70cc0bc90a705c9782be01a1 WHIRLPOOL f02d543c0fd7e89e63aba844b7c0f651a9a6bb5dbfcd58bdb64b49d08335c3270383eb62291b9f2f20ef6ec9f39eef5cf77ae1af3109296f8b1898227cca99d1 -DIST R-3.2.0.tar.gz 29124927 SHA256 f5ae953f18ba6f3d55b46556bbbf73441350f9fd22625402b723a2b81ff64f35 SHA512 c6041c854251d51dd936d3a3632c2958a0437c58488f93e5ba810e957fb7f2276e3fe4f615fb4705f2fc5a66aa50a828b54b5e4e7b4358c7fd465c71531b9828 WHIRLPOOL e21a65b9197a202691dbe903b441caf7d8b92efdffb86dcccdbf09d080177cfd472a54d381df1cca749937434ffb9c08ac74198457e320353207cd00837e1086 DIST R-3.2.2.tar.gz 29772864 SHA256 9c9152e74134b68b0f3a1c7083764adc1cb56fd8336bec003fd0ca550cd2461d SHA512 71ba470875262b9f00fb6970f209788df4dad30e0a28373b824b60d8bc6401afb7786e65387663c6490c7ddcd2bfd7f808a270a3e63238f3d7565d5f93607138 WHIRLPOOL fea59929ada1d67dafc6ad89409d18ad173af7990384033f490a00e0f794d9919aecf7cd37089d105fe03b9cf64d079e5d148622571cec3eb924c1c5bd00081e diff --git a/dev-lang/R/R-3.0.1.ebuild b/dev-lang/R/R-3.0.1.ebuild deleted file mode 100644 index 26fd33c2c648..000000000000 --- a/dev-lang/R/R-3.0.1.ebuild +++ /dev/null @@ -1,206 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=5 - -inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs - -BCP=${PN}-20130129.bash_completion -DESCRIPTION="Language and environment for statistical computing and graphics" -HOMEPAGE="http://www.r-project.org/" -SRC_URI=" - mirror://cran/src/base/R-3/${P}.tar.gz - bash-completion? ( https://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2 )" - -LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1" -SLOT="0" -KEYWORDS="amd64 hppa ia64 ppc ppc64 sparc x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos" -IUSE="bash-completion cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X" -REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )" - -CDEPEND=" - app-arch/bzip2 - app-text/ghostscript-gpl - dev-libs/libpcre - virtual/blas - cairo? ( x11-libs/cairo[X] x11-libs/pango ) - icu? ( dev-libs/icu:= ) - jpeg? ( virtual/jpeg:0 ) - lapack? ( virtual/lapack ) - perl? ( dev-lang/perl ) - png? ( media-libs/libpng:0= ) - readline? ( sys-libs/readline:0= ) - tk? ( dev-lang/tk:0= ) - X? ( x11-libs/libXmu x11-misc/xdg-utils )" - -DEPEND="${CDEPEND} - virtual/pkgconfig - doc? ( - virtual/latex-base - dev-texlive/texlive-fontsrecommended - )" - -RDEPEND="${CDEPEND} - ( || ( <sys-libs/zlib-1.2.5.1-r1 >=sys-libs/zlib-1.2.5.1-r2[minizip] ) ) - app-arch/xz-utils - java? ( >=virtual/jre-1.5 )" - -RESTRICT="minimal? ( test )" - -R_DIR="${EROOT%/}/usr/$(get_libdir)/${PN}" - -pkg_setup() { - if use openmp; then - FORTRAN_NEED_OPENMP=1 - tc-has-openmp || die "Please enable openmp support in your compiler" - fi - fortran-2_pkg_setup - filter-ldflags -Wl,-Bdirect -Bdirect - # avoid using existing R installation - unset R_HOME - # Temporary fix for bug #419761 - if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then - append-flags -fno-ipa-cp-clone - fi -} - -src_prepare() { - # gentoo bug #322965 (not applied upstream) - # https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=14505 - epatch "${FILESDIR}"/${PN}-2.11.1-parallel.patch - - # respect ldflags (not applied upstream) - # https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=14506 - epatch "${FILESDIR}"/${PN}-2.12.1-ldflags.patch - - # gentoo bug #383431 - # https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=14951 - epatch "${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch - - # https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=14953 - epatch "${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch - - # fix packages.html for doc (gentoo bug #205103) - sed -i \ - -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \ - src/library/tools/R/Rd.R || die - - # fix Rscript path when installed (gentoo bug #221061) - sed -i \ - -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${R_DIR}\"':" \ - src/unix/Makefile.in || die "sed unix Makefile failed" - - # fix HTML links to manual (gentoo bug #273957) - sed -i \ - -e 's:\.\./manual/:manual/:g' \ - $(grep -Flr ../manual/ doc) || die "sed for HTML links failed" - - use lapack && \ - export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)" - - if use X; then - export R_BROWSER="$(type -p xdg-open)" - export R_PDFVIEWER="$(type -p xdg-open)" - fi - use perl && \ - export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}" - - # don't search /usr/local - sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die - # Fix for Darwin (OS X) - if use prefix; then - if [[ ${CHOST} == *-darwin* ]] ; then - sed -i \ - -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \ - -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \ - -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \ - -e "/SHLIB_EXT/s/\.so/.dylib/" \ - configure.ac || die - # sort of "undo" 2.14.1-rmath-shared.patch - sed -i \ - -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \ - src/nmath/standalone/Makefile.in || die - else - append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib" - fi - fi - AT_M4DIR=m4 eaclocal - eautoconf -} - -src_configure() { - econf \ - --enable-byte-compiled-packages \ - --enable-R-shlib \ - --disable-R-framework \ - --with-system-zlib \ - --with-system-bzlib \ - --with-system-pcre \ - --with-system-xz \ - --without-blas \ - --docdir="${EPREFIX}/usr/share/doc/${PF}" \ - rdocdir="${EPREFIX}/usr/share/doc/${PF}" \ - $(use_enable nls) \ - $(use_enable openmp) \ - $(use_enable profile R-profiling) \ - $(use_enable profile memory-profiling) \ - $(use_enable static-libs static) \ - $(use_enable static-libs R-static-lib) \ - $(use_with cairo) \ - $(use_with icu ICU) \ - $(use_with jpeg jpeglib) \ - $(use_with lapack) \ - $(use_with !minimal recommended-packages) \ - $(use_with png libpng) \ - $(use_with readline) \ - $(use_with tiff libtiff) \ - $(use_with tk tcltk) \ - $(use_with X x) -} - -src_compile() { - export VARTEXFONTS="${T}/fonts" - emake AR="$(tc-getAR)" - emake -C src/nmath/standalone shared $(use static-libs && echo static) AR="$(tc-getAR)" - use doc && emake info pdf -} - -src_install() { - default - emake -j1 -C src/nmath/standalone DESTDIR="${D}" install - - if use doc; then - emake DESTDIR="${D}" install-info install-pdf - dosym ../manual /usr/share/doc/${PF}/html/manual - fi - - cat > 99R <<-EOF - LDPATH=${R_DIR}/lib - R_HOME=${R_DIR} - EOF - doenvd 99R - use bash-completion && newbashcomp "${WORKDIR}"/${BCP} ${PN} - # The buildsystem has a different understanding of install_names than what - # we require. Since it builds modules like shared objects (wrong), many - # objects (all modules) get an incorrect install_name. Fixing the build - # system here is not really trivial. - if [[ ${CHOST} == *-darwin* ]] ; then - local mod - pushd "${ED}"/usr/lib/R > /dev/null - for mod in $(find . -name "*.dylib") ; do - mod=${mod#./} - install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \ - "${mod}" - done - popd > /dev/null - fi - docompress -x /usr/share/doc/${PF}/NEWS.rds -} - -pkg_postinst() { - if use java; then - einfo "Re-initializing java paths for ${P}" - R CMD javareconf - fi -} diff --git a/dev-lang/R/R-3.0.3.ebuild b/dev-lang/R/R-3.0.3.ebuild deleted file mode 100644 index ec69959b5f67..000000000000 --- a/dev-lang/R/R-3.0.3.ebuild +++ /dev/null @@ -1,203 +0,0 @@ -# Copyright 1999-2014 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=5 - -inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs - -BCP=${PN}-20130129.bash_completion -DESCRIPTION="Language and environment for statistical computing and graphics" -HOMEPAGE="http://www.r-project.org/" -SRC_URI=" - mirror://cran/src/base/R-3/${P}.tar.gz - bash-completion? ( https://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2 )" - -LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1" -SLOT="0" -KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos" -IUSE="bash-completion cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X" -REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )" - -CDEPEND=" - app-arch/bzip2:0= - app-arch/xz-utils:0= - app-text/ghostscript-gpl - dev-libs/libpcre:3= - virtual/blas:0 - || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath ) - cairo? ( x11-libs/cairo[X] x11-libs/pango ) - icu? ( dev-libs/icu:= ) - jpeg? ( virtual/jpeg:0 ) - lapack? ( virtual/lapack:0 ) - perl? ( dev-lang/perl ) - png? ( media-libs/libpng:0= ) - readline? ( sys-libs/readline:0= ) - tiff? ( media-libs/tiff:0= ) - tk? ( dev-lang/tk:0= ) - X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )" - -DEPEND="${CDEPEND} - virtual/pkgconfig - doc? ( - virtual/latex-base - dev-texlive/texlive-fontsrecommended - )" - -RDEPEND="${CDEPEND} - ( || ( <sys-libs/zlib-1.2.5.1-r1:0 >=sys-libs/zlib-1.2.5.1-r2:0[minizip] ) ) - java? ( >=virtual/jre-1.5 )" - -RESTRICT="minimal? ( test )" - -R_DIR="${EROOT%/}/usr/$(get_libdir)/${PN}" - -pkg_setup() { - if use openmp; then - if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then - ewarn "OpenMP is not available in your current selected gcc" - die "need openmp capable gcc" - fi - FORTRAN_NEED_OPENMP=1 - fi - fortran-2_pkg_setup - filter-ldflags -Wl,-Bdirect -Bdirect - # avoid using existing R installation - unset R_HOME - # Temporary fix for bug #419761 - if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then - append-flags -fno-ipa-cp-clone - fi -} - -src_prepare() { - epatch \ - "${FILESDIR}"/${PN}-2.11.1-parallel.patch \ - "${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch \ - "${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch - - # fix packages.html for doc (gentoo bug #205103) - sed -i \ - -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \ - src/library/tools/R/Rd.R || die - - # fix Rscript path when installed (gentoo bug #221061) - sed -i \ - -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${R_DIR}\"':" \ - src/unix/Makefile.in || die "sed unix Makefile failed" - - # fix HTML links to manual (gentoo bug #273957) - sed -i \ - -e 's:\.\./manual/:manual/:g' \ - $(grep -Flr ../manual/ doc) || die "sed for HTML links failed" - - use lapack && \ - export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)" - - if use X; then - export R_BROWSER="$(type -p xdg-open)" - export R_PDFVIEWER="$(type -p xdg-open)" - fi - use perl && \ - export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}" - - # don't search /usr/local - sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die - # Fix for Darwin (OS X) - if use prefix; then - if [[ ${CHOST} == *-darwin* ]] ; then - sed -i \ - -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \ - -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \ - -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \ - -e "/SHLIB_EXT/s/\.so/.dylib/" \ - configure.ac || die - # sort of "undo" 2.14.1-rmath-shared.patch - sed -i \ - -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \ - src/nmath/standalone/Makefile.in || die - else - append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib" - fi - fi - AT_M4DIR=m4 eaclocal - eautoconf -} - -src_configure() { - econf \ - --enable-byte-compiled-packages \ - --enable-R-shlib \ - --disable-R-framework \ - --with-system-zlib \ - --with-system-bzlib \ - --with-system-pcre \ - --with-system-xz \ - --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \ - --docdir="${EPREFIX}/usr/share/doc/${PF}" \ - rdocdir="${EPREFIX}/usr/share/doc/${PF}" \ - $(use_enable nls) \ - $(use_enable openmp) \ - $(use_enable profile R-profiling) \ - $(use_enable profile memory-profiling) \ - $(use_enable static-libs static) \ - $(use_enable static-libs R-static-lib) \ - $(use_with cairo) \ - $(use_with icu ICU) \ - $(use_with jpeg jpeglib) \ - $(use_with lapack) \ - $(use_with !minimal recommended-packages) \ - $(use_with png libpng) \ - $(use_with readline) \ - $(use_with tiff libtiff) \ - $(use_with tk tcltk) \ - $(use_with tk tk-config "${EPREFIX}"/usr/lib/tkConfig.sh) \ - $(use_with tk tcl-config "${EPREFIX}"/usr/lib/tclConfig.sh) \ - $(use_with X x) -} - -src_compile() { - export VARTEXFONTS="${T}/fonts" - emake AR="$(tc-getAR)" - emake -C src/nmath/standalone shared $(use static-libs && echo static) AR="$(tc-getAR)" - use doc && emake info pdf -} - -src_install() { - default - emake -j1 -C src/nmath/standalone DESTDIR="${D}" install - - if use doc; then - emake DESTDIR="${D}" install-info install-pdf - dosym ../manual /usr/share/doc/${PF}/html/manual - fi - - cat > 99R <<-EOF - LDPATH=${R_DIR}/lib - R_HOME=${R_DIR} - EOF - doenvd 99R - use bash-completion && newbashcomp "${WORKDIR}"/${BCP} ${PN} - # The buildsystem has a different understanding of install_names than what - # we require. Since it builds modules like shared objects (wrong), many - # objects (all modules) get an incorrect install_name. Fixing the build - # system here is not really trivial. - if [[ ${CHOST} == *-darwin* ]] ; then - local mod - pushd "${ED}"/usr/lib/R > /dev/null - for mod in $(find . -name "*.dylib") ; do - mod=${mod#./} - install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \ - "${mod}" - done - popd > /dev/null - fi - docompress -x /usr/share/doc/${PF}/NEWS.rds -} - -pkg_postinst() { - if use java; then - einfo "Re-initializing java paths for ${P}" - R CMD javareconf - fi -} diff --git a/dev-lang/R/R-3.1.0.ebuild b/dev-lang/R/R-3.1.0.ebuild deleted file mode 100644 index 7d9ebb02fdad..000000000000 --- a/dev-lang/R/R-3.1.0.ebuild +++ /dev/null @@ -1,206 +0,0 @@ -# Copyright 1999-2014 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=5 - -inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs - -BCP=${PN}-20130129.bash_completion -DESCRIPTION="Language and environment for statistical computing and graphics" -HOMEPAGE="http://www.r-project.org/" -SRC_URI=" - mirror://cran/src/base/R-3/${P}.tar.gz - bash-completion? ( https://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2 )" - -LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1" -SLOT="0" -KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos" -IUSE="bash-completion cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X" -REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )" - -CDEPEND=" - app-arch/bzip2:0= - app-arch/xz-utils:0= - app-text/ghostscript-gpl - dev-libs/libpcre:3= - virtual/blas:0 - || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath ) - cairo? ( x11-libs/cairo:0=[X] x11-libs/pango:0= ) - icu? ( dev-libs/icu:= ) - jpeg? ( virtual/jpeg:0 ) - lapack? ( virtual/lapack:0 ) - perl? ( dev-lang/perl ) - png? ( media-libs/libpng:0= ) - readline? ( sys-libs/readline:0= ) - tiff? ( media-libs/tiff:0= ) - tk? ( dev-lang/tk:0= ) - X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )" - -DEPEND="${CDEPEND} - virtual/pkgconfig - doc? ( - virtual/latex-base - dev-texlive/texlive-fontsrecommended - )" - -RDEPEND="${CDEPEND} - ( || ( <sys-libs/zlib-1.2.5.1-r1:0 >=sys-libs/zlib-1.2.5.1-r2:0[minizip] ) ) - java? ( >=virtual/jre-1.5 )" - -RESTRICT="minimal? ( test )" - -R_DIR="${EROOT%/}/usr/$(get_libdir)/${PN}" - -pkg_setup() { - if use openmp; then - if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then - ewarn "OpenMP is not available in your current selected gcc" - die "need openmp capable gcc" - fi - FORTRAN_NEED_OPENMP=1 - fi - fortran-2_pkg_setup - filter-ldflags -Wl,-Bdirect -Bdirect - # avoid using existing R installation - unset R_HOME - # Temporary fix for bug #419761 - if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then - append-flags -fno-ipa-cp-clone - fi -} - -src_prepare() { - epatch \ - "${FILESDIR}"/${PN}-2.11.1-parallel.patch \ - "${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch \ - "${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch - - # fix packages.html for doc (gentoo bug #205103) - sed -i \ - -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \ - src/library/tools/R/Rd.R || die - - # fix Rscript path when installed (gentoo bug #221061) - sed -i \ - -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${R_DIR}\"':" \ - src/unix/Makefile.in || die "sed unix Makefile failed" - - # fix HTML links to manual (gentoo bug #273957) - sed -i \ - -e 's:\.\./manual/:manual/:g' \ - $(grep -Flr ../manual/ doc) || die "sed for HTML links failed" - - use lapack && \ - export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)" - - if use X; then - export R_BROWSER="$(type -p xdg-open)" - export R_PDFVIEWER="$(type -p xdg-open)" - fi - use perl && \ - export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}" - - # don't search /usr/local - sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die - # Fix for Darwin (OS X) - if use prefix; then - if [[ ${CHOST} == *-darwin* ]] ; then - sed -i \ - -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \ - -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \ - -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \ - -e "/SHLIB_EXT/s/\.so/.dylib/" \ - configure.ac || die - # sort of "undo" 2.14.1-rmath-shared.patch - sed -i \ - -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \ - src/nmath/standalone/Makefile.in || die - else - append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib" - fi - fi - AT_M4DIR=m4 eaclocal - eautoconf -} - -src_configure() { - # --with-system-tre \ - # tre is patched from upstream - econf \ - --enable-byte-compiled-packages \ - --enable-R-shlib \ - --disable-R-framework \ - --with-system-zlib \ - --with-system-bzlib \ - --with-system-pcre \ - --with-system-xz \ - --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \ - --docdir="${EPREFIX}/usr/share/doc/${PF}" \ - rdocdir="${EPREFIX}/usr/share/doc/${PF}" \ - $(use_enable nls) \ - $(use_enable openmp) \ - $(use_enable profile R-profiling) \ - $(use_enable profile memory-profiling) \ - $(use_enable static-libs static) \ - $(use_enable static-libs R-static-lib) \ - $(use_with cairo) \ - $(use_with icu ICU) \ - $(use_with jpeg jpeglib) \ - $(use_with lapack) \ - $(use_with !minimal recommended-packages) \ - $(use_with png libpng) \ - $(use_with readline) \ - $(use_with tiff libtiff) \ - $(use_with tk tcltk) \ - $(use_with tk tk-config "${EPREFIX}"/usr/lib/tkConfig.sh) \ - $(use_with tk tcl-config "${EPREFIX}"/usr/lib/tclConfig.sh) \ - $(use_with X x) -} - -src_compile() { - export VARTEXFONTS="${T}/fonts" - emake AR="$(tc-getAR)" - emake -C src/nmath/standalone \ - shared $(use static-libs && echo static) AR="$(tc-getAR)" - use doc && emake info pdf -} - -src_install() { - default - emake -j1 -C src/nmath/standalone DESTDIR="${D}" install - - if use doc; then - emake DESTDIR="${D}" install-info install-pdf - dosym ../manual /usr/share/doc/${PF}/html/manual - fi - - cat > 99R <<-EOF - LDPATH=${R_DIR}/lib - R_HOME=${R_DIR} - EOF - doenvd 99R - use bash-completion && newbashcomp "${WORKDIR}"/${BCP} ${PN} - # The buildsystem has a different understanding of install_names than - # we require. Since it builds modules like shared objects (wrong), many - # objects (all modules) get an incorrect install_name. Fixing the build - # system here is not really trivial. - if [[ ${CHOST} == *-darwin* ]] ; then - local mod - pushd "${ED}"/usr/lib/R > /dev/null - for mod in $(find . -name "*.dylib") ; do - mod=${mod#./} - install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \ - "${mod}" - done - popd > /dev/null - fi - docompress -x /usr/share/doc/${PF}/NEWS.rds -} - -pkg_postinst() { - if use java; then - einfo "Re-initializing java paths for ${P}" - R CMD javareconf - fi -} diff --git a/dev-lang/R/R-3.1.1.ebuild b/dev-lang/R/R-3.1.1.ebuild deleted file mode 100644 index 7ab8cdd7c478..000000000000 --- a/dev-lang/R/R-3.1.1.ebuild +++ /dev/null @@ -1,206 +0,0 @@ -# Copyright 1999-2014 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=5 - -inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs - -BCP=${PN}-20130129.bash_completion -DESCRIPTION="Language and environment for statistical computing and graphics" -HOMEPAGE="http://www.r-project.org/" -SRC_URI=" - mirror://cran/src/base/R-3/${P}.tar.gz - https://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2" - -LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1" -SLOT="0" -KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos" -IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X" -REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )" - -CDEPEND=" - app-arch/bzip2:0= - app-arch/xz-utils:0= - app-text/ghostscript-gpl - >=dev-libs/libpcre-8.35:3= - virtual/blas:0 - || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath ) - cairo? ( x11-libs/cairo:0=[X] x11-libs/pango:0= ) - icu? ( dev-libs/icu:= ) - jpeg? ( virtual/jpeg:0 ) - lapack? ( virtual/lapack:0 ) - perl? ( dev-lang/perl ) - png? ( media-libs/libpng:0= ) - readline? ( sys-libs/readline:0= ) - tiff? ( media-libs/tiff:0= ) - tk? ( dev-lang/tk:0= ) - X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )" - -DEPEND="${CDEPEND} - virtual/pkgconfig - doc? ( - virtual/latex-base - dev-texlive/texlive-fontsrecommended - )" - -RDEPEND="${CDEPEND} - ( || ( <sys-libs/zlib-1.2.5.1-r1:0 >=sys-libs/zlib-1.2.5.1-r2:0[minizip] ) ) - java? ( >=virtual/jre-1.5 )" - -RESTRICT="minimal? ( test )" - -R_DIR="${EROOT%/}/usr/$(get_libdir)/${PN}" - -pkg_setup() { - if use openmp; then - if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then - ewarn "OpenMP is not available in your current selected gcc" - die "need openmp capable gcc" - fi - FORTRAN_NEED_OPENMP=1 - fi - fortran-2_pkg_setup - filter-ldflags -Wl,-Bdirect -Bdirect - # avoid using existing R installation - unset R_HOME - # Temporary fix for bug #419761 - if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then - append-flags -fno-ipa-cp-clone - fi -} - -src_prepare() { - epatch \ - "${FILESDIR}"/${PN}-2.11.1-parallel.patch \ - "${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch \ - "${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch - - # fix packages.html for doc (gentoo bug #205103) - sed -i \ - -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \ - src/library/tools/R/Rd.R || die - - # fix Rscript path when installed (gentoo bug #221061) - sed -i \ - -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${R_DIR}\"':" \ - src/unix/Makefile.in || die "sed unix Makefile failed" - - # fix HTML links to manual (gentoo bug #273957) - sed -i \ - -e 's:\.\./manual/:manual/:g' \ - $(grep -Flr ../manual/ doc) || die "sed for HTML links failed" - - use lapack && \ - export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)" - - if use X; then - export R_BROWSER="$(type -p xdg-open)" - export R_PDFVIEWER="$(type -p xdg-open)" - fi - use perl && \ - export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}" - - # don't search /usr/local - sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die - # Fix for Darwin (OS X) - if use prefix; then - if [[ ${CHOST} == *-darwin* ]] ; then - sed -i \ - -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \ - -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \ - -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \ - -e "/SHLIB_EXT/s/\.so/.dylib/" \ - configure.ac || die - # sort of "undo" 2.14.1-rmath-shared.patch - sed -i \ - -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \ - src/nmath/standalone/Makefile.in || die - else - append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib" - fi - fi - AT_M4DIR=m4 eaclocal - eautoconf -} - -src_configure() { - # --with-system-tre \ - # tre is patched from upstream - econf \ - --enable-byte-compiled-packages \ - --enable-R-shlib \ - --disable-R-framework \ - --with-system-zlib \ - --with-system-bzlib \ - --with-system-pcre \ - --with-system-xz \ - --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \ - --docdir="${EPREFIX}/usr/share/doc/${PF}" \ - rdocdir="${EPREFIX}/usr/share/doc/${PF}" \ - $(use_enable nls) \ - $(use_enable openmp) \ - $(use_enable profile R-profiling) \ - $(use_enable profile memory-profiling) \ - $(use_enable static-libs static) \ - $(use_enable static-libs R-static-lib) \ - $(use_with cairo) \ - $(use_with icu ICU) \ - $(use_with jpeg jpeglib) \ - $(use_with lapack) \ - $(use_with !minimal recommended-packages) \ - $(use_with png libpng) \ - $(use_with readline) \ - $(use_with tiff libtiff) \ - $(use_with tk tcltk) \ - $(use_with tk tk-config "${EPREFIX}"/usr/lib/tkConfig.sh) \ - $(use_with tk tcl-config "${EPREFIX}"/usr/lib/tclConfig.sh) \ - $(use_with X x) -} - -src_compile() { - export VARTEXFONTS="${T}/fonts" - emake AR="$(tc-getAR)" - emake -C src/nmath/standalone \ - shared $(use static-libs && echo static) AR="$(tc-getAR)" - use doc && emake info pdf -} - -src_install() { - default - emake -j1 -C src/nmath/standalone DESTDIR="${D}" install - - if use doc; then - emake DESTDIR="${D}" install-info install-pdf - dosym ../manual /usr/share/doc/${PF}/html/manual - fi - - cat > 99R <<-EOF - LDPATH=${R_DIR}/lib - R_HOME=${R_DIR} - EOF - doenvd 99R - newbashcomp "${WORKDIR}"/${BCP} ${PN} - # The buildsystem has a different understanding of install_names than - # we require. Since it builds modules like shared objects (wrong), many - # objects (all modules) get an incorrect install_name. Fixing the build - # system here is not really trivial. - if [[ ${CHOST} == *-darwin* ]] ; then - local mod - pushd "${ED}"/usr/lib/R > /dev/null - for mod in $(find . -name "*.dylib") ; do - mod=${mod#./} - install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \ - "${mod}" - done - popd > /dev/null - fi - docompress -x /usr/share/doc/${PF}/NEWS.rds -} - -pkg_postinst() { - if use java; then - einfo "Re-initializing java paths for ${P}" - R CMD javareconf - fi -} diff --git a/dev-lang/R/R-3.1.2.ebuild b/dev-lang/R/R-3.1.2.ebuild deleted file mode 100644 index 7ab8cdd7c478..000000000000 --- a/dev-lang/R/R-3.1.2.ebuild +++ /dev/null @@ -1,206 +0,0 @@ -# Copyright 1999-2014 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=5 - -inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs - -BCP=${PN}-20130129.bash_completion -DESCRIPTION="Language and environment for statistical computing and graphics" -HOMEPAGE="http://www.r-project.org/" -SRC_URI=" - mirror://cran/src/base/R-3/${P}.tar.gz - https://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2" - -LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1" -SLOT="0" -KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos" -IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X" -REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )" - -CDEPEND=" - app-arch/bzip2:0= - app-arch/xz-utils:0= - app-text/ghostscript-gpl - >=dev-libs/libpcre-8.35:3= - virtual/blas:0 - || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath ) - cairo? ( x11-libs/cairo:0=[X] x11-libs/pango:0= ) - icu? ( dev-libs/icu:= ) - jpeg? ( virtual/jpeg:0 ) - lapack? ( virtual/lapack:0 ) - perl? ( dev-lang/perl ) - png? ( media-libs/libpng:0= ) - readline? ( sys-libs/readline:0= ) - tiff? ( media-libs/tiff:0= ) - tk? ( dev-lang/tk:0= ) - X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )" - -DEPEND="${CDEPEND} - virtual/pkgconfig - doc? ( - virtual/latex-base - dev-texlive/texlive-fontsrecommended - )" - -RDEPEND="${CDEPEND} - ( || ( <sys-libs/zlib-1.2.5.1-r1:0 >=sys-libs/zlib-1.2.5.1-r2:0[minizip] ) ) - java? ( >=virtual/jre-1.5 )" - -RESTRICT="minimal? ( test )" - -R_DIR="${EROOT%/}/usr/$(get_libdir)/${PN}" - -pkg_setup() { - if use openmp; then - if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then - ewarn "OpenMP is not available in your current selected gcc" - die "need openmp capable gcc" - fi - FORTRAN_NEED_OPENMP=1 - fi - fortran-2_pkg_setup - filter-ldflags -Wl,-Bdirect -Bdirect - # avoid using existing R installation - unset R_HOME - # Temporary fix for bug #419761 - if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then - append-flags -fno-ipa-cp-clone - fi -} - -src_prepare() { - epatch \ - "${FILESDIR}"/${PN}-2.11.1-parallel.patch \ - "${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch \ - "${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch - - # fix packages.html for doc (gentoo bug #205103) - sed -i \ - -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \ - src/library/tools/R/Rd.R || die - - # fix Rscript path when installed (gentoo bug #221061) - sed -i \ - -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${R_DIR}\"':" \ - src/unix/Makefile.in || die "sed unix Makefile failed" - - # fix HTML links to manual (gentoo bug #273957) - sed -i \ - -e 's:\.\./manual/:manual/:g' \ - $(grep -Flr ../manual/ doc) || die "sed for HTML links failed" - - use lapack && \ - export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)" - - if use X; then - export R_BROWSER="$(type -p xdg-open)" - export R_PDFVIEWER="$(type -p xdg-open)" - fi - use perl && \ - export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}" - - # don't search /usr/local - sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die - # Fix for Darwin (OS X) - if use prefix; then - if [[ ${CHOST} == *-darwin* ]] ; then - sed -i \ - -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \ - -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \ - -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \ - -e "/SHLIB_EXT/s/\.so/.dylib/" \ - configure.ac || die - # sort of "undo" 2.14.1-rmath-shared.patch - sed -i \ - -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \ - src/nmath/standalone/Makefile.in || die - else - append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib" - fi - fi - AT_M4DIR=m4 eaclocal - eautoconf -} - -src_configure() { - # --with-system-tre \ - # tre is patched from upstream - econf \ - --enable-byte-compiled-packages \ - --enable-R-shlib \ - --disable-R-framework \ - --with-system-zlib \ - --with-system-bzlib \ - --with-system-pcre \ - --with-system-xz \ - --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \ - --docdir="${EPREFIX}/usr/share/doc/${PF}" \ - rdocdir="${EPREFIX}/usr/share/doc/${PF}" \ - $(use_enable nls) \ - $(use_enable openmp) \ - $(use_enable profile R-profiling) \ - $(use_enable profile memory-profiling) \ - $(use_enable static-libs static) \ - $(use_enable static-libs R-static-lib) \ - $(use_with cairo) \ - $(use_with icu ICU) \ - $(use_with jpeg jpeglib) \ - $(use_with lapack) \ - $(use_with !minimal recommended-packages) \ - $(use_with png libpng) \ - $(use_with readline) \ - $(use_with tiff libtiff) \ - $(use_with tk tcltk) \ - $(use_with tk tk-config "${EPREFIX}"/usr/lib/tkConfig.sh) \ - $(use_with tk tcl-config "${EPREFIX}"/usr/lib/tclConfig.sh) \ - $(use_with X x) -} - -src_compile() { - export VARTEXFONTS="${T}/fonts" - emake AR="$(tc-getAR)" - emake -C src/nmath/standalone \ - shared $(use static-libs && echo static) AR="$(tc-getAR)" - use doc && emake info pdf -} - -src_install() { - default - emake -j1 -C src/nmath/standalone DESTDIR="${D}" install - - if use doc; then - emake DESTDIR="${D}" install-info install-pdf - dosym ../manual /usr/share/doc/${PF}/html/manual - fi - - cat > 99R <<-EOF - LDPATH=${R_DIR}/lib - R_HOME=${R_DIR} - EOF - doenvd 99R - newbashcomp "${WORKDIR}"/${BCP} ${PN} - # The buildsystem has a different understanding of install_names than - # we require. Since it builds modules like shared objects (wrong), many - # objects (all modules) get an incorrect install_name. Fixing the build - # system here is not really trivial. - if [[ ${CHOST} == *-darwin* ]] ; then - local mod - pushd "${ED}"/usr/lib/R > /dev/null - for mod in $(find . -name "*.dylib") ; do - mod=${mod#./} - install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \ - "${mod}" - done - popd > /dev/null - fi - docompress -x /usr/share/doc/${PF}/NEWS.rds -} - -pkg_postinst() { - if use java; then - einfo "Re-initializing java paths for ${P}" - R CMD javareconf - fi -} diff --git a/dev-lang/R/R-3.2.0-r1.ebuild b/dev-lang/R/R-3.2.0-r1.ebuild deleted file mode 100644 index 9c874f37e935..000000000000 --- a/dev-lang/R/R-3.2.0-r1.ebuild +++ /dev/null @@ -1,207 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=5 - -inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs - -BCP=${PN}-20130129.bash_completion -DESCRIPTION="Language and environment for statistical computing and graphics" -HOMEPAGE="http://www.r-project.org/" -SRC_URI=" - mirror://cran/src/base/R-3/${P}.tar.gz - https://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2" - -LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1" -SLOT="0" -KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos" -IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X" -REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )" - -CDEPEND=" - app-arch/bzip2:0= - app-arch/xz-utils:0= - app-text/ghostscript-gpl - >=dev-libs/libpcre-8.35:3= - virtual/blas:0 - || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath ) - cairo? ( x11-libs/cairo:0=[X] x11-libs/pango:0= ) - icu? ( dev-libs/icu:= ) - jpeg? ( virtual/jpeg:0 ) - lapack? ( virtual/lapack:0 ) - perl? ( dev-lang/perl ) - png? ( media-libs/libpng:0= ) - readline? ( sys-libs/readline:0= ) - tiff? ( media-libs/tiff:0= ) - tk? ( dev-lang/tk:0= ) - X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )" - -DEPEND="${CDEPEND} - virtual/pkgconfig - doc? ( - virtual/latex-base - dev-texlive/texlive-fontsrecommended - )" - -RDEPEND="${CDEPEND} - ( || ( <sys-libs/zlib-1.2.5.1-r1:0 >=sys-libs/zlib-1.2.5.1-r2:0[minizip] ) ) - java? ( >=virtual/jre-1.5 )" - -RESTRICT="minimal? ( test )" - -R_DIR="${EROOT%/}/usr/$(get_libdir)/${PN}" - -pkg_setup() { - if use openmp; then - if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then - ewarn "OpenMP is not available in your current selected gcc" - die "need openmp capable gcc" - fi - FORTRAN_NEED_OPENMP=1 - fi - fortran-2_pkg_setup - filter-ldflags -Wl,-Bdirect -Bdirect - # avoid using existing R installation - unset R_HOME - # Temporary fix for bug #419761 - if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then - append-flags -fno-ipa-cp-clone - fi -} - -src_prepare() { - epatch \ - "${FILESDIR}"/${PN}-2.11.1-parallel.patch \ - "${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch \ - "${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch \ - "${FILESDIR}"/${PN}-3.2.0-omitted-extern-R_running_as_main_program.patch - - # fix packages.html for doc (gentoo bug #205103) - sed -i \ - -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \ - src/library/tools/R/Rd.R || die - - # fix Rscript path when installed (gentoo bug #221061) - sed -i \ - -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${R_DIR}\"':" \ - src/unix/Makefile.in || die "sed unix Makefile failed" - - # fix HTML links to manual (gentoo bug #273957) - sed -i \ - -e 's:\.\./manual/:manual/:g' \ - $(grep -Flr ../manual/ doc) || die "sed for HTML links failed" - - use lapack && \ - export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)" - - if use X; then - export R_BROWSER="$(type -p xdg-open)" - export R_PDFVIEWER="$(type -p xdg-open)" - fi - use perl && \ - export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}" - - # don't search /usr/local - sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die - # Fix for Darwin (OS X) - if use prefix; then - if [[ ${CHOST} == *-darwin* ]] ; then - sed -i \ - -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \ - -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \ - -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \ - -e "/SHLIB_EXT/s/\.so/.dylib/" \ - configure.ac || die - # sort of "undo" 2.14.1-rmath-shared.patch - sed -i \ - -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \ - src/nmath/standalone/Makefile.in || die - else - append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib" - fi - fi - AT_M4DIR=m4 eaclocal - eautoconf -} - -src_configure() { - # --with-system-tre \ - # tre is patched from upstream - econf \ - --enable-byte-compiled-packages \ - --enable-R-shlib \ - --disable-R-framework \ - --with-system-zlib \ - --with-system-bzlib \ - --with-system-pcre \ - --with-system-xz \ - --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \ - --docdir="${EPREFIX}/usr/share/doc/${PF}" \ - rdocdir="${EPREFIX}/usr/share/doc/${PF}" \ - $(use_enable nls) \ - $(use_enable openmp) \ - $(use_enable profile R-profiling) \ - $(use_enable profile memory-profiling) \ - $(use_enable static-libs static) \ - $(use_enable static-libs R-static-lib) \ - $(use_with cairo) \ - $(use_with icu ICU) \ - $(use_with jpeg jpeglib) \ - $(use_with lapack) \ - $(use_with !minimal recommended-packages) \ - $(use_with png libpng) \ - $(use_with readline) \ - $(use_with tiff libtiff) \ - $(use_with tk tcltk) \ - $(use_with tk tk-config "${EPREFIX}"/usr/lib/tkConfig.sh) \ - $(use_with tk tcl-config "${EPREFIX}"/usr/lib/tclConfig.sh) \ - $(use_with X x) -} - -src_compile() { - export VARTEXFONTS="${T}/fonts" - emake AR="$(tc-getAR)" - emake -C src/nmath/standalone \ - shared $(use static-libs && echo static) AR="$(tc-getAR)" - use doc && emake info pdf -} - -src_install() { - default - emake -j1 -C src/nmath/standalone DESTDIR="${D}" install - - if use doc; then - emake DESTDIR="${D}" install-info install-pdf - dosym ../manual /usr/share/doc/${PF}/html/manual - fi - - cat > 99R <<-EOF - LDPATH=${R_DIR}/lib - R_HOME=${R_DIR} - EOF - doenvd 99R - newbashcomp "${WORKDIR}"/${BCP} ${PN} - # The buildsystem has a different understanding of install_names than - # we require. Since it builds modules like shared objects (wrong), many - # objects (all modules) get an incorrect install_name. Fixing the build - # system here is not really trivial. - if [[ ${CHOST} == *-darwin* ]] ; then - local mod - pushd "${ED}"/usr/lib/R > /dev/null - for mod in $(find . -name "*.dylib") ; do - mod=${mod#./} - install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \ - "${mod}" - done - popd > /dev/null - fi - docompress -x /usr/share/doc/${PF}/NEWS.rds -} - -pkg_postinst() { - if use java; then - einfo "Re-initializing java paths for ${P}" - R CMD javareconf - fi -} diff --git a/dev-lang/R/R-3.2.2.ebuild b/dev-lang/R/R-3.2.2.ebuild index de20937c836e..9229648b07e7 100644 --- a/dev-lang/R/R-3.2.2.ebuild +++ b/dev-lang/R/R-3.2.2.ebuild @@ -45,7 +45,7 @@ DEPEND="${CDEPEND} )" RDEPEND="${CDEPEND} - ( || ( <sys-libs/zlib-1.2.5.1-r1:0 >=sys-libs/zlib-1.2.5.1-r2:0[minizip] ) ) + >=sys-libs/zlib-1.2.5.1-r2:0[minizip] java? ( >=virtual/jre-1.5 )" RESTRICT="minimal? ( test )" diff --git a/dev-lang/R/files/R-2.12.1-ldflags.patch b/dev-lang/R/files/R-2.12.1-ldflags.patch deleted file mode 100644 index 2876ac3a4164..000000000000 --- a/dev-lang/R/files/R-2.12.1-ldflags.patch +++ /dev/null @@ -1,15 +0,0 @@ -Respect ldflags on rscript -Patch by Sebastien Fabbro -https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=14506 - ---- src/unix/Makefile.in.orig 2010-12-22 16:58:19.000000000 +0000 -+++ src/unix/Makefile.in 2010-12-22 16:54:16.000000000 +0000 -@@ -66,7 +66,7 @@ - - ## we need to build at install time to capture the correct 'rhome' - install-Rscript: -- $(CC) $(ALL_CPPFLAGS) $(ALL_CFLAGS) -DR_HOME='"$(rhome)"' -o Rscript \ -+ $(CC) $(ALL_CPPFLAGS) $(ALL_CFLAGS) $(LDFLAGS) -DR_HOME='"$(rhome)"' -o Rscript \ - $(srcdir)/Rscript.c - @$(MKINSTALLDIRS) "$(DESTDIR)$(Rexecbindir)" - @$(INSTALL_PROGRAM) Rscript "$(DESTDIR)$(Rexecbindir)/Rscript" diff --git a/dev-lang/R/files/R-2.14.1-rmath-shared.patch b/dev-lang/R/files/R-2.14.1-rmath-shared.patch deleted file mode 100644 index c16f20e756de..000000000000 --- a/dev-lang/R/files/R-2.14.1-rmath-shared.patch +++ /dev/null @@ -1,24 +0,0 @@ -Link with libm to fix unresolved symbols when linked with as-needed -and add a soname to the standalone math library -Patch by Sebastien Fabbro ---- src/nmath/standalone/Makefile.in.orig 2010-03-17 14:43:22.000000000 +0000 -+++ src/nmath/standalone/Makefile.in 2012-01-02 17:40:13.000000000 +0000 -@@ -64,7 +64,8 @@ - Rexeclibdir_LTLIBRARIES = $(libRmath_la) - libRmath_la_SOURCES = $(SOURCES) - libRmath_la_OBJECTS = $(OBJECTS:.o=.lo) --libRmath_la_LDFLAGS = -+libRmath_la_LDFLAGS = -Wl,-soname=libRmath.so -+libRmath_la_LIBADD = $(LIBM) - - CLEANFILES = Makedeps *.d *.o *.lo test $(SOURCES) - DISTCLEANFILES = Makefile $(Rexeclibdir_LIBRARIES) $(Rexeclibdir_LTLIBRARIES) -@@ -116,7 +117,7 @@ - $(RANLIB) $@ - - $(libRmath_la): $(libRmath_la_OBJECTS) -- $(DYLIB_LINK) -o $@ $(libRmath_la_LDFLAGS) $(libRmath_la_OBJECTS) -+ $(DYLIB_LINK) $(libRmath_la_LDFLAGS) $(libRmath_la_OBJECTS) $(libRmath_la_LIBADD) -o $@ - - test: $(srcdir)/test.c - $(CC) -o $@ $(ALL_CPPFLAGS) $(ALL_CFLAGS) $(srcdir)/test.c \ diff --git a/dev-lang/R/files/R-3.2.0-omitted-extern-R_running_as_main_program.patch b/dev-lang/R/files/R-3.2.0-omitted-extern-R_running_as_main_program.patch deleted file mode 100644 index eebe5088ff98..000000000000 --- a/dev-lang/R/files/R-3.2.0-omitted-extern-R_running_as_main_program.patch +++ /dev/null @@ -1,12 +0,0 @@ ---- R-3.2.0-orig/src/include/Rinterface.h 2015-03-19 10:02:16.000000000 +1100 -+++ R-3.2.0/src/include/Rinterface.h 2015-05-01 23:02:17.541946810 +1000 -@@ -90,7 +90,8 @@ - void fpu_setup(Rboolean); - - /* in unix/system.c */ --int R_running_as_main_program; -+/* Gentoo bug 547478 R bug https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=15899 */ -+extern int R_running_as_main_program; - - #ifdef CSTACK_DEFNS - /* duplicating Defn.h */ |